Discover dmnfarrell/peat Open Source project

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Created over 9 years ago
Updated over 9 years ago

dmnfarrell

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PEAT is a suite of programs for capturing, analyzing and predicting biophysical characteristics of proteins

pandastable

Table analysis in Tkinter using pandas DataFrames.

Python

629

tkintertable

A pure Python library for adding tables to a Tkinter application

Python

393

tablexplore

Table analysis and plotting application written in PySide2/PyQt5

Python

122

epitopepredict

Python package and command line tool for epitope prediction

Jupyter Notebook

teaching

scripts and notes for learning

Jupyter Notebook

smallrnaseq

small rna-seq analysis package

Python

pybioviz

bioinformatics visualization tools with pyviz/bokeh

Jupyter Notebook

pathogenie

Desktop tool for microbial genome annotation and gene detection

Jupyter Notebook

snipgenie

command line and desktop tool for microbial variant calling

Jupyter Notebook

epitopemap

A web application for visualizing MHC binding predictions

JavaScript

mtbc_analyses

Code for genomics analysis of MTBC locii.

learnct

dmnfarrell.github.io

mtbdiff

Characterization of Mycobacterium tuberculosis complex species using mummer and nucdiff

Jupyter Notebook

btbabm

Agent based model for bovine TB spread in herds

Jupyter Notebook

gordon-group

scripts and data for gordon group papers

Jupyter Notebook

binderapps

bokeh binder apps

Python

batchfilerename

Batch file renaming utility written in Python

Python

tracebtb

M.bovis WGS surveillance tool.

Jupyter Notebook

dmnfarrell/peat

dmnfarrell

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