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DCC
DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.circtools
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.JACUSA2
New version of JACUSA -> 2.0single-cell-nanopore
Workflow for Nanopore Sequencing of 10x single cell librariesAppleDashboard
Dashboard for analysis of Apple Watch data with interactive graphics.JACUSA
JAVA framework for accurate SNV assessmentCircTest
CircRNA testing and ploting R packageCellPlot
R package for the integrated visualisation of functional enrichment and expression data.Baltica
Baltica: integrated differential junction usagerp-bp
Rp-Bp is a Bayesian approach to predict, at base-pair resolution, ribosome occupancy and translation.ScNaST
ScNaST (Single-cell Nanopore Spatial Transcriptomics)medex
Intuitive Graphical User Interface for Medical Data ExplorationJACUSA2helper
Auxiliary R package for assessment of JACUSA2 resultsdorina
doRiNa - database of posttranscriptional regulatory elementscyntenator
Cyntenator is a software for identification of conserved syntenic blocks between multiple genomes.magnetiqueCode2022
Source code repository for informatics for life SP1ASyH
The Anonymous Synthesizer for Health Dataclinical_deid
De-Identification of Clinical Admission Notes using BiLSTM and Embedded Languages Models (ELMo) as Word RepresentationFUCHS
FUCHS - FUll circle CHaracterization from rna-SeqmAFiA
AnonymizeAndSynthesize
Code used to produce the results presented in the publication "Anonymize or Synthesize? - Privacy-Preserving Methods for Heart Failure Score Analytics"tribe-workflow
A workflow for TRIBE data based on JACUSAQutRNA
slurm-tools
A collection of helper scripts for everyday use of SLURMpulseR
HiGHmedUCCScores
Scoring functions of the HiGHmed use case Cardiology3PD
Repository of the 3PD tool: Rapid design of optimal primers for chromosome conformation capture assaysbioinfo-scripts
Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformaticians scripts/ folderPETGUI
We present PETGUI: A user-friendly interface for training and testing a language model using Pattern-Exploiting Training (PET).MiMB_JACUSA2_chapter
JACUSA2 - A framework for the mapping of RNA modificationsbareos-scripts
LINDA
rajman_et_al
Supplementary software and custom scripts for Rajman et al.nmdtxdb
Shiny application and code for the database for NMD targetsLove Open Source and this site? Check out how you can help us