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DCC
DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.circtools
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.JACUSA2
New version of JACUSA -> 2.0single-cell-nanopore
Workflow for Nanopore Sequencing of 10x single cell librariesAppleDashboard
Dashboard for analysis of Apple Watch data with interactive graphics.JACUSA
JAVA framework for accurate SNV assessmentCircTest
CircRNA testing and ploting R packageCellPlot
R package for the integrated visualisation of functional enrichment and expression data.Baltica
Baltica: integrated differential junction usagerp-bp
Rp-Bp is a Bayesian approach to predict, at base-pair resolution, ribosome occupancy and translation.ScNaST
ScNaST (Single-cell Nanopore Spatial Transcriptomics)medex
Intuitive Graphical User Interface for Medical Data ExplorationJACUSA2helper
Auxiliary R package for assessment of JACUSA2 resultsdorina
doRiNa - database of posttranscriptional regulatory elementscyntenator
Cyntenator is a software for identification of conserved syntenic blocks between multiple genomes.magnetiqueCode2022
Source code repository for informatics for life SP1ASyH
The Anonymous Synthesizer for Health Dataclinical_deid
De-Identification of Clinical Admission Notes using BiLSTM and Embedded Languages Models (ELMo) as Word RepresentationFUCHS
FUCHS - FUll circle CHaracterization from rna-SeqmAFiA
AnonymizeAndSynthesize
Code used to produce the results presented in the publication "Anonymize or Synthesize? - Privacy-Preserving Methods for Heart Failure Score Analytics"tribe-workflow
A workflow for TRIBE data based on JACUSAQutRNA
slurm-tools
A collection of helper scripts for everyday use of SLURMpulseR
HiGHmedUCCScores
Scoring functions of the HiGHmed use case Cardiology3PD
Repository of the 3PD tool: Rapid design of optimal primers for chromosome conformation capture assaysbioinfo-scripts
Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformaticians scripts/ folderPETGUI
We present PETGUI: A user-friendly interface for training and testing a language model using Pattern-Exploiting Training (PET).MiMB_JACUSA2_chapter
JACUSA2 - A framework for the mapping of RNA modificationsprimex
bareos-scripts
LINDA
rajman_et_al
Supplementary software and custom scripts for Rajman et al.Love Open Source and this site? Check out how you can help us