cytoscape/zugzwang

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Created about 9 years ago
Updated over 7 years ago

cytoscape/zugzwang

cytoscape

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Zugzwang (German: forced to make a move) is a new OpenGL-accelerated renderer for Cytoscape that prioritizes rapid visual feedback above all else – thus the name.

cytoscape.js

Graph theory (network) library for visualisation and analysis

cytoscape

Cytoscape: an open source platform for network analysis and visualization

cytoscape-tutorials

Collection of modular Cytoscape tutorials for online presentation using reveal.js

ipycytoscape

A Cytoscape Jupyter widget

cytoscape.js-dagre

The Dagre layout for DAGs and trees for Cytoscape.js

py2cytoscape

Python utilities for Cytoscape and Cytoscape.js

cytoscape.js-edgehandles

Edge creation UI extension for Cytoscape.js

cytoscape.js-cxtmenu

Context menu for Cytoscape.js

cytoscape.js-cola

The Cola.js physics simulation layout for Cytoscape.js

cytoscape.js-cose-bilkent

The CoSE layout for Cytoscape.js by Bilkent with enhanced compound node placement.

cytoscape.js-popper

A wrapper for Popper.js that lets you position divs relative to Cytoscape elements

cyjShiny

An R/shiny widget for cytoscape.js

cytoscape-automation

Collection of scripts that include programmatic io and control of Cytoscape

cytoscape.js-klay

The Klay layout algorithm for Cytoscape.js

wineandcheesemap

cytoscape.js-panzoom

Panzoom extension for Cytoscape.js

cytoscape.js-navigator

Bird's eye view pan and zoom control for Cytoscape.js.

py4cytoscape

Python library for calling Cytoscape Automation via CyREST

cytosnap

A Node.js package that renders images of Cytoscape.js graphs on the server using Puppeteer

RCy3

New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community

cytoscape.js-qtip

A Cytoscape.js extension that wraps the QTip jQuery library

cytoscape.js-tutorial-demo

Out of date. Refer to https://blog.js.cytoscape.org/tutorials/

cytoscape-jupyter-widget

Cytoscape.js based network visualizer for Jupyter Notebook

cytoscape.js-elk

The ELK layout algorithm adapter for Cytoscape.js

cytoscape-impl

Cytoscape 3 implementation bundles.

cytoscape.js-automove

An extension for Cytoscape.js that automatically updates node positions based on specified rules

cytoscape.js-euler

Euler is a fast, high-quality force-directed (physics simulation) layout for Cytoscape.js

cyREST

Core App: REST API module for Cytoscape

cytoscape.js-compound-drag-and-drop

Compound node drag-and-drop UI for adding and removing children

cy-jupyterlab

Jupyter lab widget for rendering graphs (networks)

Jupyter Notebook

cytoscape.js-spread

The speedy Spread physics simulation layout for Cytoscape.js

cytoscape.github.com

Cytoscape org web site.

cytoscape-api

Cytoscape 3 API bundles.

cytoscape-app-samples

Cytoscape 3 sample code for App developers.

cytoscape.js-blog

The Cytoscape.js blog, using Github pages and Jekyll

cytoscape-gui-distribution

Cytoscape 3 desktop version.

appstore

Cytoscape App Store web application code

cytoscape.js-tutorials

Cytoscape.js tutorials project for GSOC 2016

cytoscape-manual

Markdown version of Cytoscape manual

cytoscape-explore

Network visualization webapp.

cyjs-sample

js-graph-lib-comparison

A comparison of JS graph libs

jupyter-cytoscape

Cytoscape.js API support in JS, Python, and R Jupyter kernels

cytoscape.js-hierarchical

A Cytoscape.js extension for the hierarchical clustering algorithm

slush-cytoscape-extension

A Cytoscape.js extension generator

cytoscape.js-k-means

A Cytoscape.js extension for the k-means, k-medoids, & fuzzy c-means family of algorithms

enrichment-table-app

Creates a new table for performing, storing and viewing functional enrichment analysis

enrichment-map-webapp

cytoscapeweb

Flash-based graph visualization tool which can be integrated in HTML via its Javascript API (http://cytoscapeweb.cytoscape.org).

cytoscape.js-leaflet

A Cytoscape.js extension to overlay a graph (network) on top of a Leaflet map

wiki-plugin-cytodemo

jupyter-bridge

Bridge enables Jupyter code on remote server to execute HTTP calls on local PC

web-export-templates

Parent project for all Cytoscape.js export options.

biopax

Core App: BioPAX support

cytoscape.js-arbor

The Arbor physics simulation layout for Cytoscape.js

js4cytoscape

JavaScript library for calling Cytoscape Automation via CyREST

cx2js

A CX to Cytoscape JS library

cytoscape.js-springy

The Springy physics simulation layout for Cytoscape.js

mozfest2015-session

A starting point for building graphs with Cytoscape.js during the MozFest 2015 open science session

fgsea-service

r2cytoscape

R functions for Cytoscape automation

diffusion

A Cytoscape app to interface with the heat diffusion service

cytoscape.js-reveal-slides

Reveal.js for presentation "Displaying interactive networks on the web"

cytoscape.js-markov-cluster

A Cytoscape.js extension for the Markov cluster algorithm

copycat-layout

Map the locations of nodes (and the network view) from one network to another. Easily compare networks side by side by positioning the views similarly.

Jupyter Notebook

idmapper

Identifier mapping

cytosnap-demo

A demo Cytosnap server

cytoscape-app

DEPRECATED!! (Was used for for Core Apps)

cxio

CX serialization and de-serialization

mcode-service

cyChart

interactive histogram and scatter charts to select nodes or create filters

cytoscape.js-demos

User-submitted demos of Cytoscape.js

cx-viz-converter

cytoscape-platform-tests-js

Reveal.js testing webapp for running platform tests on Cytoscape via CyREST calls

cytoscape-web

legend-creator

Cytoscape3 app to create legends as annotations

cytoscape-admin-scripts

Build and maintenance scripts for Cytoscape core developers.

Jupyter Notebook

file-transfer-app

generator-cytoscape-extension

A Cytoscape.js extension generator

sbml

Core App: SBML Reader

cyBrowser

cytoscape.js-matter

foograph

Automatically exported from code.google.com/p/foograph

cytoscape-home-mock

idmap

Client for Id Mapping Service

LargestSubnetwork

Select Largest Subnetwork App

enrichmentmap-service

EnrichmentMap microservice

cytoscape-app-template

Cytoscape 3 project files for App developers.

cytoscape2

Cytoscape 2.x series code.

app-collections

repo for src and poms defining collections of apps

cyjs-export-simple

Template code for simple export from Cytoscape 3.2.

js-perf

Rendering and layout performance test page for Cytoscape.js

cx

CX serialization and de-serialization in Cytoscape

cytoscape.js-rpc

Use JSON-RPC to drive a remote instance of Cytoscape.js

script-app-demo

Demonstration of a script-app

cytoscape-ismb-2020

Jupyter Notebook

javascript-notebooks

A Jekyll site for publishing JS notebooks for Cytoscape automation via js4cytoscape

cytoscape.js-affinity-propagation

A Cytoscape.js extension for the affinity propagation algorithm