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cytoscape.js
Graph theory (network) library for visualisation and analysiscytoscape
Cytoscape: an open source platform for network analysis and visualizationcytoscape-tutorials
Collection of modular Cytoscape tutorials for online presentation using reveal.jsipycytoscape
A Cytoscape Jupyter widgetcytoscape.js-dagre
The Dagre layout for DAGs and trees for Cytoscape.jspy2cytoscape
Python utilities for Cytoscape and Cytoscape.jscytoscape.js-edgehandles
Edge creation UI extension for Cytoscape.jscytoscape.js-cxtmenu
Context menu for Cytoscape.jscytoscape.js-cola
The Cola.js physics simulation layout for Cytoscape.jscytoscape.js-cose-bilkent
The CoSE layout for Cytoscape.js by Bilkent with enhanced compound node placement.cytoscape.js-popper
A wrapper for Popper.js that lets you position divs relative to Cytoscape elementscyjShiny
An R/shiny widget for cytoscape.jscytoscape-automation
Collection of scripts that include programmatic io and control of Cytoscapecytoscape.js-klay
The Klay layout algorithm for Cytoscape.jswineandcheesemap
cytoscape.js-panzoom
Panzoom extension for Cytoscape.jscytoscape.js-navigator
Bird's eye view pan and zoom control for Cytoscape.js.py4cytoscape
Python library for calling Cytoscape Automation via CyRESTcytosnap
A Node.js package that renders images of Cytoscape.js graphs on the server using PuppeteerRCy3
New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer communitycytoscape.js-elk
The ELK layout algorithm adapter for Cytoscape.jscytoscape.js-qtip
A Cytoscape.js extension that wraps the QTip jQuery librarycytoscape.js-tutorial-demo
Out of date. Refer to https://blog.js.cytoscape.org/tutorials/cytoscape-impl
Cytoscape 3 implementation bundles.cytoscape.js-automove
An extension for Cytoscape.js that automatically updates node positions based on specified rulescytoscape.js-euler
Euler is a fast, high-quality force-directed (physics simulation) layout for Cytoscape.jscyREST
Core App: REST API module for Cytoscapecytoscape.js-compound-drag-and-drop
Compound node drag-and-drop UI for adding and removing childrencytoscape.js-spread
The speedy Spread physics simulation layout for Cytoscape.jscy-jupyterlab
Jupyter lab widget for rendering graphs (networks)cytoscape.github.com
Cytoscape org web site.cytoscape-api
Cytoscape 3 API bundles.cytoscape-app-samples
Cytoscape 3 sample code for App developers.cytoscape.js-blog
The Cytoscape.js blog, using Github pages and Jekyllcytoscape-gui-distribution
Cytoscape 3 desktop version.appstore
Cytoscape App Store web application codecytoscape.js-tutorials
Cytoscape.js tutorials project for GSOC 2016cytoscape-explore
Network visualization webapp.cyjs-sample
cytoscape-manual
Markdown version of Cytoscape manualjs-graph-lib-comparison
A comparison of JS graph libsjupyter-cytoscape
Cytoscape.js API support in JS, Python, and R Jupyter kernelscytoscape.js-hierarchical
A Cytoscape.js extension for the hierarchical clustering algorithmslush-cytoscape-extension
A Cytoscape.js extension generatorcytoscape.js-k-means
A Cytoscape.js extension for the k-means, k-medoids, & fuzzy c-means family of algorithmsenrichment-table-app
Creates a new table for performing, storing and viewing functional enrichment analysisenrichment-map-webapp
cytoscapeweb
Flash-based graph visualization tool which can be integrated in HTML via its Javascript API (http://cytoscapeweb.cytoscape.org).cytoscape.js-leaflet
A Cytoscape.js extension to overlay a graph (network) on top of a Leaflet mapwiki-plugin-cytodemo
cytoscape-web
cy-community-detection
Community Detection App for Cytoscapejupyter-bridge
Bridge enables Jupyter code on remote server to execute HTTP calls on local PCweb-export-templates
Parent project for all Cytoscape.js export options.cytoscape.js-arbor
The Arbor physics simulation layout for Cytoscape.jsjs4cytoscape
JavaScript library for calling Cytoscape Automation via CyRESTbiopax
Core App: BioPAX supportcx2js
A CX to Cytoscape JS libraryzugzwang
Zugzwang (German: forced to make a move) is a new OpenGL-accelerated renderer for Cytoscape that prioritizes rapid visual feedback above all else – thus the name.cytoscape.js-springy
The Springy physics simulation layout for Cytoscape.jsmozfest2015-session
A starting point for building graphs with Cytoscape.js during the MozFest 2015 open science sessionfgsea-service
r2cytoscape
R functions for Cytoscape automationcytoscape.js-reveal-slides
Reveal.js for presentation "Displaying interactive networks on the web"cytoscape.js-markov-cluster
A Cytoscape.js extension for the Markov cluster algorithmdiffusion
A Cytoscape app to interface with the heat diffusion servicecopycat-layout
Map the locations of nodes (and the network view) from one network to another. Easily compare networks side by side by positioning the views similarly.idmapper
Identifier mappingcytoscape-app
DEPRECATED!! (Was used for for Core Apps)cxio
CX serialization and de-serializationmcode-service
cytosnap-demo
A demo Cytosnap servercyChart
interactive histogram and scatter charts to select nodes or create filterscytoscape-admin-scripts
Build and maintenance scripts for Cytoscape core developers.cytoscape.js-demos
User-submitted demos of Cytoscape.jscx
CX serialization and de-serialization in Cytoscapecx-viz-converter
cytoscape-platform-tests-js
Reveal.js testing webapp for running platform tests on Cytoscape via CyREST callslegend-creator
Cytoscape3 app to create legends as annotationsfile-transfer-app
sbml
Core App: SBML Readercytoscape.js-matter
cyBrowser
cytoscape-home-mock
generator-cytoscape-extension
A Cytoscape.js extension generatorfoograph
Automatically exported from code.google.com/p/foographidmap
Client for Id Mapping ServiceLargestSubnetwork
Select Largest Subnetwork Appcytoscape-app-template
Cytoscape 3 project files for App developers.cytoscape2
Cytoscape 2.x series code.enrichmentmap-service
EnrichmentMap microserviceapp-collections
repo for src and poms defining collections of appscyjs-export-simple
Template code for simple export from Cytoscape 3.2.js-perf
Rendering and layout performance test page for Cytoscape.jscytoscape.js-rpc
Use JSON-RPC to drive a remote instance of Cytoscape.jsscript-app-demo
Demonstration of a script-appcytoscape-ismb-2020
javascript-notebooks
A Jekyll site for publishing JS notebooks for Cytoscape automation via js4cytoscapecytoscape.js-affinity-propagation
A Cytoscape.js extension for the affinity propagation algorithmcytoscape-home
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