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cytoscape.js
Graph theory (network) library for visualisation and analysiscytoscape
Cytoscape: an open source platform for network analysis and visualizationcytoscape-tutorials
Collection of modular Cytoscape tutorials for online presentation using reveal.jsipycytoscape
A Cytoscape Jupyter widgetcytoscape.js-dagre
The Dagre layout for DAGs and trees for Cytoscape.jspy2cytoscape
Python utilities for Cytoscape and Cytoscape.jscytoscape.js-edgehandles
Edge creation UI extension for Cytoscape.jscytoscape.js-cxtmenu
Context menu for Cytoscape.jscytoscape.js-cola
The Cola.js physics simulation layout for Cytoscape.jscytoscape.js-cose-bilkent
The CoSE layout for Cytoscape.js by Bilkent with enhanced compound node placement.cytoscape.js-popper
A wrapper for Popper.js that lets you position divs relative to Cytoscape elementscyjShiny
An R/shiny widget for cytoscape.jscytoscape-automation
Collection of scripts that include programmatic io and control of Cytoscapecytoscape.js-klay
The Klay layout algorithm for Cytoscape.jswineandcheesemap
cytoscape.js-panzoom
Panzoom extension for Cytoscape.jscytoscape.js-navigator
Bird's eye view pan and zoom control for Cytoscape.js.py4cytoscape
Python library for calling Cytoscape Automation via CyRESTcytosnap
A Node.js package that renders images of Cytoscape.js graphs on the server using PuppeteerRCy3
New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer communitycytoscape.js-elk
The ELK layout algorithm adapter for Cytoscape.jscytoscape.js-qtip
A Cytoscape.js extension that wraps the QTip jQuery librarycytoscape.js-tutorial-demo
Out of date. Refer to https://blog.js.cytoscape.org/tutorials/cytoscape-jupyter-widget
Cytoscape.js based network visualizer for Jupyter Notebookcytoscape-impl
Cytoscape 3 implementation bundles.cytoscape.js-automove
An extension for Cytoscape.js that automatically updates node positions based on specified rulescytoscape.js-euler
Euler is a fast, high-quality force-directed (physics simulation) layout for Cytoscape.jscyREST
Core App: REST API module for Cytoscapecytoscape.js-compound-drag-and-drop
Compound node drag-and-drop UI for adding and removing childrencytoscape.js-spread
The speedy Spread physics simulation layout for Cytoscape.jscy-jupyterlab
Jupyter lab widget for rendering graphs (networks)cytoscape.github.com
Cytoscape org web site.cytoscape-api
Cytoscape 3 API bundles.cytoscape-app-samples
Cytoscape 3 sample code for App developers.cytoscape.js-blog
The Cytoscape.js blog, using Github pages and Jekyllcytoscape-gui-distribution
Cytoscape 3 desktop version.appstore
Cytoscape App Store web application codecytoscape.js-tutorials
Cytoscape.js tutorials project for GSOC 2016cytoscape-explore
Network visualization webapp.cyjs-sample
cytoscape-manual
Markdown version of Cytoscape manualjs-graph-lib-comparison
A comparison of JS graph libsjupyter-cytoscape
Cytoscape.js API support in JS, Python, and R Jupyter kernelscytoscape.js-hierarchical
A Cytoscape.js extension for the hierarchical clustering algorithmslush-cytoscape-extension
A Cytoscape.js extension generatorcytoscape.js-k-means
A Cytoscape.js extension for the k-means, k-medoids, & fuzzy c-means family of algorithmsenrichment-table-app
Creates a new table for performing, storing and viewing functional enrichment analysisenrichment-map-webapp
cytoscapeweb
Flash-based graph visualization tool which can be integrated in HTML via its Javascript API (http://cytoscapeweb.cytoscape.org).cytoscape.js-leaflet
A Cytoscape.js extension to overlay a graph (network) on top of a Leaflet mapwiki-plugin-cytodemo
cytoscape-web
cy-community-detection
Community Detection App for Cytoscapejupyter-bridge
Bridge enables Jupyter code on remote server to execute HTTP calls on local PCweb-export-templates
Parent project for all Cytoscape.js export options.cytoscape.js-arbor
The Arbor physics simulation layout for Cytoscape.jsjs4cytoscape
JavaScript library for calling Cytoscape Automation via CyRESTbiopax
Core App: BioPAX supportcx2js
A CX to Cytoscape JS libraryzugzwang
Zugzwang (German: forced to make a move) is a new OpenGL-accelerated renderer for Cytoscape that prioritizes rapid visual feedback above all else – thus the name.cytoscape.js-springy
The Springy physics simulation layout for Cytoscape.jsmozfest2015-session
A starting point for building graphs with Cytoscape.js during the MozFest 2015 open science sessionfgsea-service
r2cytoscape
R functions for Cytoscape automationcytoscape.js-reveal-slides
Reveal.js for presentation "Displaying interactive networks on the web"cytoscape.js-markov-cluster
A Cytoscape.js extension for the Markov cluster algorithmdiffusion
A Cytoscape app to interface with the heat diffusion servicecopycat-layout
Map the locations of nodes (and the network view) from one network to another. Easily compare networks side by side by positioning the views similarly.idmapper
Identifier mappingcxio
CX serialization and de-serializationmcode-service
cytosnap-demo
A demo Cytosnap servercyChart
interactive histogram and scatter charts to select nodes or create filterscytoscape-admin-scripts
Build and maintenance scripts for Cytoscape core developers.cytoscape.js-demos
User-submitted demos of Cytoscape.jscx
CX serialization and de-serialization in Cytoscapecx-viz-converter
cytoscape-platform-tests-js
Reveal.js testing webapp for running platform tests on Cytoscape via CyREST callslegend-creator
Cytoscape3 app to create legends as annotationsfile-transfer-app
sbml
Core App: SBML Readercytoscape.js-matter
cyBrowser
cytoscape-home-mock
generator-cytoscape-extension
A Cytoscape.js extension generatorfoograph
Automatically exported from code.google.com/p/foographidmap
Client for Id Mapping ServiceLargestSubnetwork
Select Largest Subnetwork Appcytoscape-app-template
Cytoscape 3 project files for App developers.cytoscape2
Cytoscape 2.x series code.enrichmentmap-service
EnrichmentMap microserviceapp-collections
repo for src and poms defining collections of appscyjs-export-simple
Template code for simple export from Cytoscape 3.2.js-perf
Rendering and layout performance test page for Cytoscape.jscytoscape.js-rpc
Use JSON-RPC to drive a remote instance of Cytoscape.jsscript-app-demo
Demonstration of a script-appcytoscape-ismb-2020
javascript-notebooks
A Jekyll site for publishing JS notebooks for Cytoscape automation via js4cytoscapecytoscape.js-affinity-propagation
A Cytoscape.js extension for the affinity propagation algorithmcytoscape-home
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