Discover cytoscape/cytoscape.js-reveal-slides Open Source project

Cytoscape: an open source platform for network analysis and visualization

9,325

cytoscape

Shell

518

cytoscape-tutorials

Collection of modular Cytoscape tutorials for online presentation using reveal.js

A Cytoscape Jupyter widget

309

ipycytoscape

The Dagre layout for DAGs and trees for Cytoscape.js

256

cytoscape.js-dagre

Python utilities for Cytoscape and Cytoscape.js

225

py2cytoscape

Edge creation UI extension for Cytoscape.js

178

cytoscape.js-edgehandles

Context menu for Cytoscape.js

160

cytoscape.js-cxtmenu

The Cola.js physics simulation layout for Cytoscape.js

155

cytoscape.js-cola

The CoSE layout for Cytoscape.js by Bilkent with enhanced compound node placement.

133

cytoscape.js-cose-bilkent

A wrapper for Popper.js that lets you position divs relative to Cytoscape elements

116

cytoscape.js-popper

An R/shiny widget for cytoscape.js

cyjShiny

Collection of scripts that include programmatic io and control of Cytoscape

cytoscape-automation

The Klay layout algorithm for Cytoscape.js

cytoscape.js-klay

wineandcheesemap

Panzoom extension for Cytoscape.js

cytoscape.js-panzoom

CSS

cytoscape.js-navigator

Bird's eye view pan and zoom control for Cytoscape.js.

Python library for calling Cytoscape Automation via CyREST

py4cytoscape

A Node.js package that renders images of Cytoscape.js graphs on the server using Puppeteer

cytosnap

New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community

RCy3

cytoscape.js-qtip

A Cytoscape.js extension that wraps the QTip jQuery library

Out of date. Refer to https://blog.js.cytoscape.org/tutorials/

cytoscape.js-tutorial-demo

Cytoscape.js based network visualizer for Jupyter Notebook

cytoscape-jupyter-widget

The ELK layout algorithm adapter for Cytoscape.js

cytoscape.js-elk

Cytoscape 3 implementation bundles.

cytoscape-impl

An extension for Cytoscape.js that automatically updates node positions based on specified rules

cytoscape.js-automove

Euler is a fast, high-quality force-directed (physics simulation) layout for Cytoscape.js

cytoscape.js-euler

Core App: REST API module for Cytoscape

cyREST

Compound node drag-and-drop UI for adding and removing children

cytoscape.js-compound-drag-and-drop

Jupyter lab widget for rendering graphs (networks)

cy-jupyterlab

The speedy Spread physics simulation layout for Cytoscape.js

cytoscape.js-spread

cytoscape.github.com

Cytoscape org web site.

cytoscape-api

Cytoscape 3 API bundles.

Cytoscape 3 sample code for App developers.

cytoscape-app-samples

The Cytoscape.js blog, using Github pages and Jekyll

cytoscape.js-blog

Cytoscape 3 desktop version.

cytoscape-gui-distribution

Cytoscape App Store web application code

appstore

Cytoscape.js tutorials project for GSOC 2016

cytoscape.js-tutorials

Markdown version of Cytoscape manual

cytoscape-manual

cytoscape-explore

Network visualization webapp.

cyjs-sample

A comparison of JS graph libs

js-graph-lib-comparison

Cytoscape.js API support in JS, Python, and R Jupyter kernels

jupyter-cytoscape

A Cytoscape.js extension for the hierarchical clustering algorithm

cytoscape.js-hierarchical

A Cytoscape.js extension generator

slush-cytoscape-extension

A Cytoscape.js extension for the k-means, k-medoids, & fuzzy c-means family of algorithms

cytoscape.js-k-means

Creates a new table for performing, storing and viewing functional enrichment analysis

enrichment-table-app

enrichment-map-webapp

Flash-based graph visualization tool which can be integrated in HTML via its Javascript API (http://cytoscapeweb.cytoscape.org).

cytoscapeweb

ActionScript

cytoscape.js-leaflet

A Cytoscape.js extension to overlay a graph (network) on top of a Leaflet map

Bridge enables Jupyter code on remote server to execute HTTP calls on local PC

wiki-plugin-cytodemo

CoffeeScript

jupyter-bridge

Parent project for all Cytoscape.js export options.

web-export-templates

biopax

Core App: BioPAX support

The Arbor physics simulation layout for Cytoscape.js

cytoscape.js-arbor

JavaScript library for calling Cytoscape Automation via CyREST

js4cytoscape

A CX to Cytoscape JS library

cx2js

Zugzwang (German: forced to make a move) is a new OpenGL-accelerated renderer for Cytoscape that prioritizes rapid visual feedback above all else – thus the name.

zugzwang

The Springy physics simulation layout for Cytoscape.js

cytoscape.js-springy

A starting point for building graphs with Cytoscape.js during the MozFest 2015 open science session

mozfest2015-session

R functions for Cytoscape automation

fgsea-service

r2cytoscape

diffusion

A Cytoscape app to interface with the heat diffusion service

A Cytoscape.js extension for the Markov cluster algorithm

cytoscape.js-markov-cluster

Map the locations of nodes (and the network view) from one network to another. Easily compare networks side by side by positioning the views similarly.

copycat-layout

idmapper

Identifier mapping

DEPRECATED!! (Was used for for Core Apps)

cytosnap-demo

A demo Cytosnap server

cytoscape-app

cxio

CX serialization and de-serialization

interactive histogram and scatter charts to select nodes or create filters

mcode-service

cyChart

User-submitted demos of Cytoscape.js

cytoscape.js-demos

cx-viz-converter

Reveal.js testing webapp for running platform tests on Cytoscape via CyREST calls

cytoscape-platform-tests-js

Cytoscape3 app to create legends as annotations

cytoscape-web

TypeScript

legend-creator

Build and maintenance scripts for Cytoscape core developers.

cytoscape-admin-scripts

file-transfer-app

A Cytoscape.js extension generator

generator-cytoscape-extension

sbml

Core App: SBML Reader

cyBrowser

cytoscape.js-matter

Automatically exported from code.google.com/p/foograph

foograph

Client for Id Mapping Service

cytoscape-home-mock

TypeScript

idmap

Select Largest Subnetwork App

LargestSubnetwork

EnrichmentMap microservice

enrichmentmap-service

Cytoscape 3 project files for App developers.

cytoscape-app-template

cytoscape2

Cytoscape 2.x series code.

repo for src and poms defining collections of apps

app-collections

Template code for simple export from Cytoscape 3.2.

cyjs-export-simple

ApacheConf

js-perf

Rendering and layout performance test page for Cytoscape.js

CX serialization and de-serialization in Cytoscape

Use JSON-RPC to drive a remote instance of Cytoscape.js

cytoscape.js-rpc

Demonstration of a script-app

script-app-demo

cytoscape-ismb-2020

A Jekyll site for publishing JS notebooks for Cytoscape automation via js4cytoscape

javascript-notebooks

A Cytoscape.js extension for the affinity propagation algorithm

cytoscape.js-affinity-propagation