clintval/.dotfiles

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2
Language
Shell
License
MIT License
Created almost 7 years ago
Updated over 6 years ago

clintval/.dotfiles

clintval

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My dashboard

sample-sheet

A permissively licensed library designed to replace Illumina's Experiment Manager

cvbio

Artisanal 🤣 bioinformatics tools and pipelines in Scala

genome-browser

A lightweight Python graphing API for genomic features

seattle-food-truck

Python app for the glorious food trucks in Seattle 🌭

nucleic

Analysis and plotting library for base substitution spectra and signatures

snakescale

Non-strict wrappers for the data pipelining language Snakemake

gimme

Provisioning stack for EC2 instances powered by Vagrant and Ansible (unmaintained, difficult to use on new MacOS)

vartovcf

Convert variants from VarDict/VarDictJava into VCF v4.2 format.

comp-bio-conferences

Intl. Computational Biology & Bioinformatics conferences on the CLI

neodisambiguate

Disambiguate reads that were mapped to multiple references

krakenplot

🦑 Visualize phylogenetic trees from the taxonomic sequence classifier Kraken

mpl-helpers

Matplotlib wrappers for those hard-to-remember figure tweaks.

aur-packages

Packages I maintain on the Arch User Repository (AUR)

clintval.github.io

biodrawing

Small sketches of common ideas with a biology or bioinformatics theme.

iterato

Safe and completely lazy parallel iteration in Scala

pendant

Python 3.6+ library for submitting to AWS Batch interactively

interval

A better genomic interval that is compatible with HTSJDK

coursework

bimap

A modern bidirectional map in Scala