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cfrnet
Counterfactual Regressionstructuredinference
Structured Inference Networks for Nonlinear State Space Modelsembeddings
Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"TabLLM
dmm
Deep Markov ModelsdeepDiagnosis
A torch package for learning diagnosis models from temporal patient data.HealthKnowledgeGraph
Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' dataco-llm
Co-LLM: Learning to Decode Collaboratively with Multiple Language Modelsomop-learn
Python package for machine learning for healthcare using a OMOP common data modelprancer
Platform enabling Rapid Annotation for Clinical Entity Recognitiongumbel-max-scm
Code for "Counterfactual Off-Policy Evaluation with Gumbel-Max Structural Causal Models" (ICML 2019)ML-tools
Miscellaneous tools for clinical MLhuman_ai_deferral
Human-AI Deferral Evaluation Benchmark (Learning to Defer) AISTATS23anchorExplorer
trajectory-inspection
Code for "Trajectory Inspection: A Method for Iterative Clinician-Driven Design of Reinforcement Learning Studies"cotrain-prompting
Code for co-training large language models (e.g. T0) with smaller ones (e.g. BERT) to boost few-shot performanceContextualAutocomplete_MLHC2020
Code for Contextual Autocomplete paper published in MLHC2020realhumaneval
teaching-to-understand-ai
Code and webpages for our study on teaching humans to defer to an AIdgm
Deep Generative Model (Torch)learn-to-defer
Code for "Consistent Estimators for Learning to Defer to an Expert" (ICML 2020)sc-foundation-eval
Code for evaluating single cell foundation models scBERT and scGPTSparsityBoost
http://cs.nyu.edu/~dsontag/papers/BrennerSontag_uai13.pdfproxy-anchor-regression
Code for ICML 2021 paper "Regularizing towards Causal Invariance: Linear Models with Proxies" (ICML 2021)onboarding_human_ai
Onboarding Humans to work with AI: Algorithms to find regions and describe them in natural language that show how humans should collaborate with AI (NeurIPS23)vae_ssl
Scalable semi-supervised learning with deep variational autoencodersamr-uti-stm
Code for "A decision algorithm to promote outpatient antimicrobial stewardship for uncomplicated urinary tract infection"dgc_predict
Applies and evaluates a variety of methods to complete a partially-observed data tensor, e.g. comprising gene expression profiles corresponding to various drugs, applied in various cellular contexts.mimic-language-model
A conditional language model for MIMIC-III.ml_mmrf
Machine Learning with data from the Multiple Myeloma Research Foundationoverparam
ckd_progression
parametric-robustness-evaluation
Code for paper "Evaluating Robustness to Dataset Shift via Parametric Robustness Sets"active_learn_to_defer
Code for Sample Efficient Learning of Predictors that Complement Humans (ICML 2022)surprising-sepsis
large-scale-temporal-shift-study
Code for Large-Scale Study of Temporal Shift in Health Insurance Claims. Christina X Ji, Ahmed M Alaa, David Sontag. CHIL, 2023. https://arxiv.org/abs/2305.05087amr-uti-kdd
Treatment Policy Learning in Multiobjective Settings with Fully Observed Outcomes (KDD 2020)theanomodels
A lightweight wrapper around theano for rapid-prototyping of modelsclinical-anchors
finding-decision-heterogeneity-regions
Code for "Finding Regions of Heterogeneity in Decision-Making via Expected Conditional Covariance" at NeurIPS 2021fully-observed-policy-learning
Code for "Treatment Policy Learning in Multiobjective Settings with Fully Observed Outcomes" (KDD 2020)fw-inference
Barrier Frank-Wolfe for Marginal Inferenceoncology_rationale_extraction
Functionality from "Automated NLP extraction of clinical rationale for treatment discontinuation in breast cancer"overlap-code
Code for "Characterization of Overlap in Observational Studies" (AISTATS 2020)omop-variation
Tools to identify and evaluate heterogeneity in decision-making processes.clinicalml-scBERT-NMI
analysis code to reproduce results in NMI submissionrct-obs-extrapolation
Code for paper, "Falsification before Extrapolation in Causal Effect Estimation"Love Open Source and this site? Check out how you can help us