YosefLab/mrvi

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BSD 3-Clause "New...
Created over 1 year ago
Updated about 1 month ago

YosefLab/mrvi

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Multi-resolution Variational Inference

VISION

Signature Analysis and Visualization for Single-Cell RNA-seq

Compass

In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

Cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

Hotspot

scone

scib-metrics

Accelerated, Python-only, single-cell integration benchmarking metrics

ImpulseDE2

FastProject

Dimensionality reduction for single cell RNA-seq data

velovi

mrvi_archive

Multi-resolution Variational Inference

SymSim

PopV

TRAPeS

TCR Reconstruction Algorithm for Paired-End Single cell

LineagePulse

Differential expression analysis for single-cell RNA-seq data

totalVI_reproducibility

Jupyter Notebook

MPRAnalyze

Analyse enhancer strength based on MPRA experiments.

compassR

An R library for conducting analyses on COMPASS data.

epitome

Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

scRAD

Single-Cell Reproducibility Across Donors

ImpulseDE

BRAPeS

BCR reconstruction from short single cell RNA-seq

scvi-criticism

Evaluation metrics for scvi-tools models

Rline

R wrapper around the LINE algorithm for network embedding

UMIpipe

A pipeline for processing UMI RNAseq data

Jupyter Notebook

yoseflab.github.io

scVI-data

datasets for scVI

theoretical_lineage_tracing_reproducibility

Jupyter Notebook

VIVS

Calibrated Identification of Feature Dependencies in Single-cell Multiomics

temporal_condition_shortest_walk

TcellSelectionTiming

velovi_reproducibility

Jupyter Notebook

scvi-tools-reproducibility

Reproducibility of results/figures from scvi-tools paper

condition_connectivity_problems

Algorithms for connectivity problems in condition-varying protein networks

visionpy

Functional interpretation of single cell similarity maps

scvi-hub-references

Code for the pre-trained reference models uploaded to scvi-hub on HuggingFace

scvi-tools-docker

Docker images for scvi-tools

CZI-Immuneaging

Jupyter Notebook