YosefLab/MPRAnalyze YosefLab/MPRAnalyze

  • Stars
    star
    11
  • Rank 1,694,829 (Top 34 %)
  • Language
    R
  • Created over 7 years ago
  • Updated about 4 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
YosefLab/MPRAnalyze
github

YosefLab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Analyse enhancer strength based on MPRA experiments.

More Repositories

1

VISION

Signature Analysis and Visualization for Single-Cell RNA-seq
R
152
star
2

Compass

In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
Python
92
star
3

Hotspot

Python
83
star
4

Cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
Python
76
star
5

scone

R
53
star
6

scib-metrics

Accelerated, Python-only, single-cell integration benchmarking metrics
Python
45
star
7

ImpulseDE2

R
37
star
8

velovi

Python
36
star
9

FastProject

Dimensionality reduction for single cell RNA-seq data
Python
35
star
10

SymSim

R
23
star
11

PopV

Python
23
star
12

mrvi_archive

Multi-resolution Variational Inference
Python
22
star
13

totalVI_reproducibility

Jupyter Notebook
15
star
14

TRAPeS

TCR Reconstruction Algorithm for Paired-End Single cell
Python
14
star
15

LineagePulse

Differential expression analysis for single-cell RNA-seq data
R
12
star
16

compassR

An R library for conducting analyses on COMPASS data.
R
12
star
17

epitome

Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility
Python
10
star
18

ImpulseDE

ImpulseDE
R
6
star
19

scRAD

Single-Cell Reproducibility Across Donors
R
5
star
20

BRAPeS

BCR reconstruction from short single cell RNA-seq
Makefile
4
star
21

scvi-criticism

Evaluation metrics for scvi-tools models
Python
4
star
22

Rline

R wrapper around the LINE algorithm for network embedding
C++
4
star
23

mrvi

Multi-resolution Variational Inference
Python
4
star
24

UMIpipe

A pipeline for processing UMI RNAseq data
Jupyter Notebook
3
star
25

yoseflab.github.io

JavaScript
3
star
26

scVI-data

datasets for scVI
3
star
27

theoretical_lineage_tracing_reproducibility

Jupyter Notebook
3
star
28

temporal_condition_shortest_walk

Python
2
star
29

velovi_reproducibility

Jupyter Notebook
2
star
30

condition_connectivity_problems

Algorithms for connectivity problems in condition-varying protein networks
Python
2
star
31

VIVS

Calibrated Identification of Feature Dependencies in Single-cell Multiomics
Python
2
star
32

Thymus_CITE-seq

Jupyter Notebook
2
star
33

TcellSelectionTiming

HTML
1
star
34

scvi-tools-reproducibility

Reproducibility of results/figures from scvi-tools paper
HTML
1
star
35

treedata

anndata with trees
Python
1
star
36

visionpy

Functional interpretation of single cell similarity maps
JavaScript
1
star
37

scvi-hub-references

Code for the pre-trained reference models uploaded to scvi-hub on HuggingFace
Python
1
star
38

scvi-tools-docker

Docker images for scvi-tools
Dockerfile
1
star
39

CZI-Immuneaging

Jupyter Notebook
1
star