wrapr
is an
R
package that supplies powerful tools
for writing and debugging R
code.
Introduction
Primary wrapr
services include:
%.>%
(dot arrow pipe)unpack
/to
(assign to multiple values)as_named_list
(build up a named list quickly)build_frame()
/draw_frame()
(data.frame
builders and formatters )bc()
(blank concatenate)qc()
(quoting concatenate):=
(named map builder)%?%
(coalesce)%.|%
(reduce/expand args)uniques()
(safeunique()
replacement)partition_tables()
/execute_parallel()
DebugFnW()
(function debug wrappers)Ξ»()
(anonymous function builder)let()
(let block)evalb()
/si()
(evaluate withbquote
/ string interpolation)sortv()
(sort a data.frame by a set of columns).stop_if_dot_args()
(check for unexpected arguments)
library(wrapr)
packageVersion("wrapr")
# [1] '2.0.8'
date()
# [1] "Thu Jun 10 13:49:30 2021"
%.>%
(dot pipe or dot arrow)
%.>%
dot arrow pipe is a pipe with intended semantics:
β
a %.>% b
β is to be treated approximately as if the user had written β{ . <- a; b };
β with β%.>%
β being treated as left-associative.
Other R
pipes include
magrittr
and
pipeR
.
The following two expressions should be equivalent:
cos(exp(sin(4)))
# [1] 0.8919465
4 %.>% sin(.) %.>% exp(.) %.>% cos(.)
# [1] 0.8919465
The notation is quite powerful as it treats pipe stages as expression
parameterized over the variable β.
β. This means you do not need to
introduce functions to express stages. The following is a valid
dot-pipe:
1:4 %.>% .^2
# [1] 1 4 9 16
The notation is also very regular as we show below.
1:4 %.>% sin
# [1] 0.8414710 0.9092974 0.1411200 -0.7568025
1:4 %.>% sin(.)
# [1] 0.8414710 0.9092974 0.1411200 -0.7568025
1:4 %.>% base::sin
# [1] 0.8414710 0.9092974 0.1411200 -0.7568025
1:4 %.>% base::sin(.)
# [1] 0.8414710 0.9092974 0.1411200 -0.7568025
1:4 %.>% function(x) { x + 1 }
# [1] 2 3 4 5
1:4 %.>% (function(x) { x + 1 })
# [1] 2 3 4 5
1:4 %.>% { .^2 }
# [1] 1 4 9 16
1:4 %.>% ( .^2 )
# [1] 1 4 9 16
Regularity can be a big advantage in teaching and comprehension. Please see βIn Praise of Syntactic Sugarβ for more details. Some formal documentation can be found here.
- Some obvious βdot-freeβ" right-hand sides are rejected. Pipelines are meant to move values through a sequence of transforms, and not just for side-effects. Example: `5 %.>% 6` deliberately stops as `6` is a right-hand side that obviously does not use its incoming value. This check is only applied to values, not functions on the right-hand side.
- Trying to pipe into a an βzero argument function evaluation expressionβ such as `sin()` is prohibited as it looks too much like the user declaring `sin()` takes no arguments. One must pipe into either a function, function name, or an non-trivial expression (such as `sin(.)`). A useful error message is returned to the user: `wrapr::pipe does not allow direct piping into a no-argument function call expression (such as "sin()" please use sin(.))`.
- Some reserved words can not be piped into. One example is `5 %.>% return(.)` is prohibited as the obvious pipe implementation would not actually escape from user functions as users may intend.
- Obvious de-references (such as `$`, `::`, `@`, and a few more) on the right-hand side are treated performed (example: `5 %.>% base::sin(.)`).
- Outer parenthesis on the right-hand side are removed (example: `5 %.>% (sin(.))`).
- Anonymous function constructions are evaluated so the function can be applied (example: `5 %.>% function(x) {x+1}` returns 6, just as `5 %.>% (function(x) {x+1})(.)` does).
- Checks and transforms are not performed on items inside braces (example: `5 %.>% { function(x) {x+1} }` returns `function(x) {x+1}`, not 6).
- The dot arrow pipe has S3/S4 dispatch (please see ). However as the right-hand side of the pipe is normally held unevaluated, we donβt know the type except in special cases (such as the rigth-hand side being referred to by a name or variable). To force the evaluation of a pipe term, simply wrap it in `.()`.
The dot pipe is also user configurable through standard S3
/S4
methods.
The dot pipe has been formally written up in the R Journal.
@article{RJ-2018-042,
author = {John Mount and Nina Zumel},
title = {{Dot-Pipe: an S3 Extensible Pipe for R}},
year = {2018},
journal = {{The R Journal}},
url = {https://journal.r-project.org/archive/2018/RJ-2018-042/index.html}
}
unpack
/to
multiple assignments
Unpack a named list into the current environment by name (for a
positional based multiple assignment operator please see
zeallot
, for another
named base multiple assigment please see
vadr::bind
).
d <- data.frame(
x = 1:9,
group = c('train', 'calibrate', 'test'),
stringsAsFactors = FALSE)
unpack[
train_data = train,
calibrate_data = calibrate,
test_data = test
] := split(d, d$group)
knitr::kable(train_data)
x | group | |
---|---|---|
1 | 1 | train |
4 | 4 | train |
7 | 7 | train |
as_named_list
Build up named lists. Very convenient for managing workspaces when used
with used with
unpack
/to
.
as_named_list(train_data, calibrate_data, test_data)
# $train_data
# x group
# 1 1 train
# 4 4 train
# 7 7 train
#
# $calibrate_data
# x group
# 2 2 calibrate
# 5 5 calibrate
# 8 8 calibrate
#
# $test_data
# x group
# 3 3 test
# 6 6 test
# 9 9 test
build_frame()
/ draw_frame()
build_frame()
is a convenient way to type in a small example data.frame
in natural
row order. This can be very legible and saves having to perform a
transpose in oneβs head.
draw_frame()
is the complimentary function that formats a given data.frame
(and is
a great way to produce neatened examples).
x <- build_frame(
"measure" , "training", "validation" |
"minus binary cross entropy", 5 , -7 |
"accuracy" , 0.8 , 0.6 )
print(x)
# measure training validation
# 1 minus binary cross entropy 5.0 -7.0
# 2 accuracy 0.8 0.6
str(x)
# 'data.frame': 2 obs. of 3 variables:
# $ measure : chr "minus binary cross entropy" "accuracy"
# $ training : num 5 0.8
# $ validation: num -7 0.6
cat(draw_frame(x))
# x <- wrapr::build_frame(
# "measure" , "training", "validation" |
# "minus binary cross entropy", 5 , -7 |
# "accuracy" , 0.8 , 0.6 )
qc()
(quoting concatenate)
qc()
is a quoting variation on R
βs concatenate operator c()
. This
code such as the following:
qc(a = x, b = y)
# a b
# "x" "y"
qc(one, two, three)
# [1] "one" "two" "three"
qc()
also allows bquote()
driven .()
-style argument escaping.
aname <- "I_am_a"
yvalue <- "six"
qc(.(aname) := x, b = .(yvalue))
# I_am_a b
# "x" "six"
Notice the :=
notation is required for syntacitic reasons.
:=
(named map builder)
:=
is the βnamed map builderβ. It allows code such as the following:
'a' := 'x'
# a
# "x"
The important property of named map builder is it accepts values on the left-hand side allowing the following:
name <- 'variableNameFromElsewhere'
name := 'newBinding'
# variableNameFromElsewhere
# "newBinding"
A nice property is :=
commutes (in the sense of algebra or category
theory) with R
βs concatenation function c()
. That is the following
two statements are equivalent:
c('a', 'b') := c('x', 'y')
# a b
# "x" "y"
c('a' := 'x', 'b' := 'y')
# a b
# "x" "y"
The named map builder is designed to synergize with
seplyr
.
%?%
(coalesce)
The coalesce operator tries to replace elements of its first argument
with elements from its second argument. In particular %?%
replaces
NULL vectors and NULL/NA entries of vectors and lists.
Example:
c(1, NA) %?% list(NA, 20)
# [1] 1 20
%.|%
(reduce/expand args)
x %.|% f
stands for f(x[[1]], x[[2]], ..., x[[length(x)]])
.
v %|.% x
also stands for f(x[[1]], x[[2]], ..., x[[length(x)]])
. The
two operators are the same, the variation just allowing the user to
choose the order they write things. The mnemonic is: βdata goes on the
dot-side of the operator.β
args <- list('prefix_', c(1:3), '_suffix')
args %.|% paste0
# [1] "prefix_1_suffix" "prefix_2_suffix" "prefix_3_suffix"
# prefix_1_suffix" "prefix_2_suffix" "prefix_3_suffix"
paste0 %|.% args
# [1] "prefix_1_suffix" "prefix_2_suffix" "prefix_3_suffix"
# prefix_1_suffix" "prefix_2_suffix" "prefix_3_suffix"
DebugFnW()
DebugFnW()
wraps a function for debugging. If the function throws an
exception the execution context (function arguments, function name, and
more) is captured and stored for the user. The function call can then be
reconstituted, inspected and even re-run with a step-debugger. Please
see our free debugging video
series
and vignette('DebugFnW', package='wrapr')
for examples.
Ξ»()
(anonymous function builder)
Ξ»()
is a concise abstract function creator or βlambda
abstractionβ. It is a
placeholder that allows the use of the -character for very concise
function abstraction.
Example:
# Make sure lambda function builder is in our enironment.
wrapr::defineLambda()
# square numbers 1 through 4
sapply(1:4, Ξ»(x, x^2))
# [1] 1 4 9 16
let()
let()
allows execution of arbitrary code with substituted variable
names (note this is subtly different than binding values for names as
with base::substitute()
or base::with()
).
The function is simple and powerful. It treats strings as variable names and re-writes expressions as if you had used the denoted variables. For example the following block of code is equivalent to having written βa + aβ.
a <- 7
let(
c(VAR = 'a'),
VAR + VAR
)
# [1] 14
This is useful in re-adapting non-standard evaluation interfaces (NSE interfaces) so one can script or program over them.
We are trying to make let()
self teaching and self documenting (to the
extent that makes sense). For example try the arguments βeval=FALSE
β
prevent execution and see what would have been executed, or
debug=TRUE
to have the replaced code printed in addition to being
executed:
let(
c(VAR = 'a'),
eval = FALSE,
{
VAR + VAR
}
)
# {
# a + a
# }
let(
c(VAR = 'a'),
debugPrint = TRUE,
{
VAR + VAR
}
)
# $VAR
# [1] "a"
#
# {
# a + a
# }
# [1] 14
Please see vignette('let', package='wrapr')
for more examples. Some
formal documentation can be found
here.
wrapr::let()
was inspired by gtools::strmacro()
and
base::bquote()
, please see
here
for some notes on macro methods in R
.
evalb()
/si()
(evaluate with bquote
/ string interpolation)
wrapr
supplies unified notation for quasi-quotation and string
interpolation.
angle = 1:10
variable <- "angle"
# execute code
evalb(
plot(x = .(-variable), y = sin(.(-variable)))
)
# alter string
si("plot(x = .(variable), y = .(variable))")
# [1] "plot(x = \"angle\", y = \"angle\")"
The extra .(-x)
form is a shortcut for .(as.name(x))
.
sortv()
(sort a data.frame by a set of columns)
This is the sort command that is missing from R
: sort a data.frame
by a chosen set of columns specified in a variable.
d <- data.frame(
x = c(2, 2, 3, 3, 1, 1),
y = 6:1,
z = 1:6)
order_cols <- c('x', 'y')
sortv(d, order_cols)
# x y z
# 6 1 1 6
# 5 1 2 5
# 2 2 5 2
# 1 2 6 1
# 4 3 3 4
# 3 3 4 3
Installation
Install with:
install.packages("wrapr")
More Information
More details on wrapr
capabilities can be found in the following two
technical articles:
Note
Note: wrapr
is meant only for βtame namesβ, that is: variables and
column names that are also valid simple (without quotes) R
variables
names.