Discover UoA-eResearch/covid19_NZ Open Source project

A Unity hololens viewer for DICOM images

DICOM_viewer

fit_api

A web interface to gain consent from a user, to obtain their Google Fit data from the API, such that it can be resurfaced more easily via API

A Unity/VR surgical simulator for the Oculus Quest

SurgeryQuest

face_api

aggregator for Face++ and Kairos

ResearchHub monorepo deployed to AWS. Angular front-end. Contentful/ElasticSearch Lambda function. Apollo GraphQL server. Terraform.

hub-stack

TypeScript

leapmotion_gestures

Experiment testing feasibility of leap motion hand gesture recognition

A template for capturing task recipes for repeatable scientific practices in a consistent format and hosted in a centralised online repository.

eresearch-cookbook

A python script to automatically retrieve the latest MoH excel sheet, and convert it to csv and json formats. Checks the MoH website for new data every 10 minutes and commits here.

nz-covid19-data-auto

Leaflet map of the AT Realtime Vehicle Positions feed

AT_realtime

Heatmap system to geographically display eDNA (Environmental DNA) data from New Zealand

eDNA

A web-based user interface to twint (https://github.com/twintproject/twint)

twint-ui

A simple flask web app to act as an orchestration/administrative interface across the blockcert projects / workflow

cert-manager

Building a community to help share the latest tools and research best practice. Also hacking on bits of code and data.

HackyHour

A Unity Vive project to view photospheres in VR

PhotosphereViewer

hand_recognition

OpenCV hand recognition

Citation network analysis using Microsoft Academic and 3d-force-graph

research-hub-web

Research Hub Web

TypeScript

citations

A Unity (Vive) project visualising ANSYS results that simulate blood flow through the coronary artery

coronary_cfd

GLSL

hololens_babelfish

Performs translation on the fly, showing any spoken english as text and translated into the chosen language

vmhandbook

RVM handbooks for researchers

earthquake-viz

Unity/vive application using crest (https://github.com/crest-ocean/crest). Piha VR rip simulator for Giovanni Coco

unity_vr_swim

tangibles

A framework for capacitive tangible interaction on the web and mobile devices.

A simple python script to batch convert Planet TIFs to Top of Atmosphere Reflectance

planet_toa

Python scripts for working with embryo images stored in sqlite files. For Nick Knowlton.

research-hub-contentful-reporting

TypeScript

IVF

An Interactive COVID-19 Model in Julia

covid19-model

Julia

research-hub-api

A RESTful API for the Research Hub

Java

SeaLevelRiseDevonport_Vive

ansible

Installing software automatically on Linux VMs

Analysis of argo data near the south pole

argo

A python script to load in ANSYS outputs into blender

coronary_cfd_blender

Photogrammetry of the Tapuaeroa River in the Gear VR

river_gear_vr

pandaplot

A simple python script to plot an pcolormesh heatmap using pandas

A simple Python / bottle script to sample points from geospatial rasters via API. Powers http://elevation.auckland-cer.cloud.edu.au/

flt_api

Some exploratory data analysis of the global Safegraph POI dataset, with a Python Jupyter notebook

safegraph_POIs

Web-based monitoring of jobs running on Auckland NeSI cluster

cer_mojo

early_universe

Visualisation of the early universe in the Vive. Based on pspectre (http://www.cosmology.auckland.ac.nz/2010/10/16/pspectre/) outputs.

dietcost

Meal planner. For Stefanie / Sally McKay / Bruce Kidd

Simple bottle script to launch a docker container, and then redirect the user to that container

docker-launcher

Centre for eResearch project management backend

project-centre

Java

3d_campus_unity

A Unity application to view the 3D campus in stereoscopic 3D/Vive/hololens/gear VR/android/webgl

island_wave_flume

Blender script to read in ESRI ASCII and generate a mesh

Dynamically displays broadcast text in the hololens

hololens_subtitles

ReligiousAffiliationChart

Chart about conversion to religion and de-conversion from religion during lifetime.

saga-gis

C++

NZDep

Some EDA around the NZDep over time

Ingestion scripts to automate creation and data incorporation for UoA iteration of myTardis

mytardis_ingestion

A 3D campus viewer, using blend4web (https://www.blend4web.com/en/)

3d_campus_b4w

Art project in collaboration with Shannon Novak. Unity/Hololens

gordon

ShaderLab

dynamic_network_graph

A web-based tool using vis.js to generate a network graph dynamically

Support for external identifiers for datasets

ckanext-external_id

Deep learning tutorial for Winter Bootcamp

deep-learning-tutorial-2017

A JavaScript library based on react, deck.gl, and plotly to build dashboards of integrated maps and plots

deckly

Python script for Blender to create singular, closed meshes.

roonka_volume_models

Example code for accessing the UoA Infoblox through Python or Ruby

hackday2018_infoblox

Serverless GraphQL Server for the Research Hub Dashboard

dashboard-graphql

VR samples, adjusted for the Gear VR controller as per https://developer.oculus.com/blog/adding-gear-vr-controller-support-to-the-unity-vr-samples/

vr_samples

prx_fishtank

Simulation of monomer - dimer - ring binding of Human Peroxiredoxin 3

rstudio-git

ahuahu_great_mercury

The Ahuahu/Great Mercury Island Database project aiming to set up a Collective Access instance that can house archaeology data

nectar_uoa_gpu_graph

Collect data on UoA Nectar GPUs

EZID external ID provider for the ckanext-external_id plugin

ckanext-ezid

Simple bash script (for Linux) and powershell script (for Windows) to post output of nvidia-smi to a server, and a simple python bottle mysql application to recieve and store that data

gpulogger

Serverless Framework version of the app-client-specific-lambda Lambda function used to restrict Cognito login to a list of allowed groups.

cognito-authorisation-sf

MPAi

MPAi in JS using WASM

A web application that can receive an image stream, and play a tone based on the dominant hue

synesthesia

Hands-on introduction to leveraging containers in research code (for ResBaz 2024)

resbaz-2024-containers

Dockerfile

mytardis_ime

Instrument Data Wizard - a metadata editor for instrument users