ShujiaHuang/genedev-introduce

This repository has been archived on 21/Feb/2021
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ShujiaHuang/genedev-introduce

ShujiaHuang

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基因组学挑战题说明

Cpp-Primer-Plus-6th

《C++ Primer Plus 第6版（中文版）》原书代码、习题答案和个人笔记，仅供学习和交流。

ilus

A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.

geneview

Genomics data visualization in Python by using matplotlib.

qmplot

A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.

cmdbtools

Command line tools for CMDB varaints browser

basevar

This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially for NIPT data

draw_ngs

Programs for drawing chromosome figure by using NGS data

bioweekly

这里记录每周值得分享的生命科学和生物信息学进展内容，周日发布。

RefHap

A Reliable and Fast Algorithm for Single Individual Haplotyping

huangshujia.com

A personal website for Shujia Huang

genotools

A NGS data analysis toolkit

ShujiaHuang.github.io

GitHub homepage of huangshujia.me

AsmVar2

【Force on Genotyping】A new and practical human (or diploid) genome variants caller for de novo assembly or long reads alignment

SOAPaligner

SOAPaligner(also named soap2) is a member of the SOAP (Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment.

speedwgs

MachineLearning_Note

Notes for machine learning

Jupyter Notebook

ngslib

A C++ library for reading high-throughput sequencing data.

gatk_pipeline

GATK Pipeline: Recalibrates mapping qualities and calls variants using GATK