Discover ShujiaHuang/basevar Open Source project

Stars
20
Rank 1,121,974 (Top 23 %)
Language
Python
Created over 5 years ago
Updated 7 months ago

ShujiaHuang

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially for NIPT data

Cpp-Primer-Plus-6th

《C++ Primer Plus 第6版（中文版）》原书代码、习题答案和个人笔记，仅供学习和交流。

C++

1,500

ilus

A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.

Python

geneview

Genomics data visualization in Python by using matplotlib.

Python

qmplot

A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.

Python

cmdbtools

Command line tools for CMDB varaints browser

Python

draw_ngs

Programs for drawing chromosome figure by using NGS data

Perl

bioweekly

这里记录每周值得分享的生命科学和生物信息学进展内容，周日发布。

genedev-introduce

基因组学挑战题说明

Shell

RefHap

A Reliable and Fast Algorithm for Single Individual Haplotyping

Java

huangshujia.com

A personal website for Shujia Huang

SCSS

genotools

A NGS data analysis toolkit

Python

ShujiaHuang.github.io

GitHub homepage of huangshujia.me

HTML

AsmVar2

【Force on Genotyping】A new and practical human (or diploid) genome variants caller for de novo assembly or long reads alignment

Python

SOAPaligner

SOAPaligner(also named soap2) is a member of the SOAP (Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment.

speedwgs

Perl

MachineLearning_Note

Notes for machine learning

Jupyter Notebook

ngslib

A C++ library for reading high-throughput sequencing data.

C++

gatk_pipeline

GATK Pipeline: Recalibrates mapping qualities and calls variants using GATK

C++

ShujiaHuang/basevar

ShujiaHuang

Reviews

Repository Details

More Repositories