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GraphST
Batch-effect-removal-benchmarking
A benchmark of batch-effect correction methods for single-cell RNA sequencing dataRphenograph
Rphenograph: R implementation of the PhenoGraph algorithmSEDR
SEDR_analyses
ezSingleCell2
SpatialGlue
SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.FastIntegration
FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysiscytofkit2
DISCOtoolkit
DISCO_manuscript
Mpath
Mpath: an algorithm for constructing multi-branching cell lineages from single-cell dataDISCOtoolkit_py
Python version of DISCO toolkitClusterX
ClusterX: Fast clustering by automatic search and find of density peaksBone_Marrow_Aging
Harmony
GraphST_Tutorials
cytofkit_analysis_data_code
The data and analysis scripts used in cytofkit paperSpatialGlue_notebook
SpatialGlue_3M
Extended version of SpatialGlue for integration of spatial triplet modality data.uSORT
uSORT: A self-refining ordering pipeline for gene selectionDISCO_learning
Tell you how to use DISCO effectivelySpatialGlue_tutorials
The tutorial is to show how to apply SpatialGlue to integrate spatial multi-omics data to decipher tissue heterogeneity.heart_aging
The codes for the manuscript about heart agingLove Open Source and this site? Check out how you can help us