JinmiaoChenLab/cytofkit JinmiaoChenLab/cytofkit

  • Stars
    star
    56
  • Rank 516,240 (Top 11 %)
  • Language
    R
  • Created about 8 years ago
  • Updated over 3 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
JinmiaoChenLab/cytofkit
github

JinmiaoChenLab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

cytofkit: an integrated flow/mass cytometry data analysis pipeline

More Repositories

1

GraphST

Python
75
star
2

Batch-effect-removal-benchmarking

A benchmark of batch-effect correction methods for single-cell RNA sequencing data
Jupyter Notebook
67
star
3

Rphenograph

Rphenograph: R implementation of the PhenoGraph algorithm
R
44
star
4

SEDR

Python
36
star
5

SEDR_analyses

R
28
star
6

FastIntegration

FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
R
21
star
7

cytofkit2

R
20
star
8

DISCOtoolkit

R
17
star
9

DISCO_manuscript

R
8
star
10

Mpath

Mpath: an algorithm for constructing multi-branching cell lineages from single-cell data
6
star
11

DISCOtoolkit_py

Python version of DISCO toolkit
Python
6
star
12

ClusterX

ClusterX: Fast clustering by automatic search and find of density peaks
R
4
star
13

Bone_Marrow_Aging

R
3
star
14

Harmony

R
2
star
15

SpatialGlue

SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
Python
2
star
16

ezSingleCell2

R
2
star
17

GraphST_Tutorials

Python
2
star
18

cytofkit_analysis_data_code

The data and analysis scripts used in cytofkit paper
HTML
2
star
19

uSORT

uSORT: A self-refining ordering pipeline for gene selection
R
1
star
20

DISCO_learning

Tell you how to use DISCO effectively
Jupyter Notebook
1
star