Jinmiao Chen's Lab (@JinmiaoChenLab)
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JinmiaoChenLab

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Top repositories

1

GraphST

Python
66
star
2

Batch-effect-removal-benchmarking

A benchmark of batch-effect correction methods for single-cell RNA sequencing data
Jupyter Notebook
65
star
3

cytofkit

cytofkit: an integrated flow/mass cytometry data analysis pipeline
R
55
star
4

Rphenograph

Rphenograph: R implementation of the PhenoGraph algorithm
R
44
star
5

SEDR

Python
34
star
6

SEDR_analyses

R
27
star
7

FastIntegration

FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
R
21
star
8

cytofkit2

R
20
star
9

DISCOtoolkit

R
15
star
10

DISCO_manuscript

R
8
star
11

Mpath

Mpath: an algorithm for constructing multi-branching cell lineages from single-cell data
6
star
12

DISCOtoolkit_py

Python version of DISCO toolkit
Python
5
star
13

ClusterX

ClusterX: Fast clustering by automatic search and find of density peaks
R
4
star
14

Harmony

R
2
star
15

Bone_Marrow_Aging

R
2
star
16

ezSingleCell2

R
2
star
17

cytofkit_analysis_data_code

The data and analysis scripts used in cytofkit paper
HTML
2
star
18

uSORT

uSORT: A self-refining ordering pipeline for gene selection
R
1
star
19

SpatialGlue

SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
Python
1
star
20

GraphST_Tutorials

Python
1
star
21

DISCO_learning

Tell you how to use DISCO effectively
Jupyter Notebook
1
star