JinmiaoChenLab/Rphenograph

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Language
R
Created over 8 years ago
Updated over 4 years ago

JinmiaoChenLab/Rphenograph

JinmiaoChenLab

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Rphenograph: R implementation of the PhenoGraph algorithm

GraphST

Batch-effect-removal-benchmarking

A benchmark of batch-effect correction methods for single-cell RNA sequencing data

Jupyter Notebook

cytofkit

cytofkit: an integrated flow/mass cytometry data analysis pipeline

SEDR

SEDR_analyses

ezSingleCell2

SpatialGlue

SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.

FastIntegration

FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis

cytofkit2

DISCOtoolkit

DISCO_manuscript

Mpath

Mpath: an algorithm for constructing multi-branching cell lineages from single-cell data

DISCOtoolkit_py

Python version of DISCO toolkit

ClusterX

ClusterX: Fast clustering by automatic search and find of density peaks

Bone_Marrow_Aging

Harmony

GraphST_Tutorials

cytofkit_analysis_data_code

The data and analysis scripts used in cytofkit paper

SpatialGlue_notebook

Jupyter Notebook

SpatialGlue_3M

Extended version of SpatialGlue for integration of spatial triplet modality data.

uSORT

uSORT: A self-refining ordering pipeline for gene selection

DISCO_learning

Tell you how to use DISCO effectively

Jupyter Notebook

SpatialGlue_tutorials

The tutorial is to show how to apply SpatialGlue to integrate spatial multi-omics data to decipher tissue heterogeneity.

heart_aging

The codes for the manuscript about heart aging