GRONINGEN-MICROBIOME-CENTRE/DMP

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GRONINGEN-MICROBIOME-CENTRE/DMP

GRONINGEN-MICROBIOME-CENTRE

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Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.1101/2020.11.27.401125v1 and full data can be requested from EGA (https://ega-archive.org/studies/EGAS00001005027) and Lifelines biobank (https://www.lifelines.nl/researcher)

Groningen-Microbiome

Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen

MicrobeRX

SV_GWAS

This repository contains the code used for SV-GWAS project

Lifelines_NEXT

Lifelines NEXT is a birth cohort designed to study the effects of intrinsic and extrinsic determinants on health and disease in a four-generation design. It is embedded within the Lifelines cohort study, a prospective three-generation population-based cohort study recording the health and health-related aspects of 167,729 individuals living in Northern Netherlands. In Lifelines NEXT we include 1500 pregnant women intensively follow them, their partners and their children until at least 1 year after birth. This repository describes the codes for the microbiome associated projects within Lifelines NEXT including fecal (microbiome and virome), breastmilk microbiome, vaginal mcirobiome and oral microbiome. Here we also integrate mutpliple multi-omic layers including metabolomics, proteomics and extensive phenotypic data

MicrobeRX_DrugPredictions

This repository includes the databases and analysis workflow for 1083 orally administrated drugs using MicrobeRX

DMP_MentalHeath

Dutch Microbiome Project, gut-brain axis

TransplantLines

TransplantLines project

SV_BA

Metagenome-wide SV-based association study on bile acids