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bcalm
compacted de Bruijn graph construction in low memoryminia
Minia is a short-read assembler based on a de Bruijn graphgatb-core
Core library of the Genome Analysis Toolbox with de-Bruijn graphsimka
Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.dsk
k-mer counting softwareDiscoSnp
DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.MindTheGap
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.gatb-minia-pipeline
GATB Minia assembly pipelinebloocoo
Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.pyGATB
Python3 wrapper for GATB-Core.leon
Leon - FASTA and FASTQ read compressorshort_read_connector
Short Read Connector (SRC)TakeABreak
TakeABreak detects inversion breakpoints in read datasets without a reference genomegatb-tools-machine
Build a single Docker image containing all GATB-Tools ready to be used. This is an official repository, not a mirror.gatb-core-tuto
This project hosts the source code of the GATB-Core Programming Online Tutorial.Love Open Source and this site? Check out how you can help us