CanDIG/federated_1kg

This repository has been archived on 19/Dec/2020
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CanDIG/federated_1kg

CanDIG

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Repository for the federated thousand genomes analysis project

CanDIGv2

The CanDIG v2 platform

images_bakeoff

Test bundling of bwa, picard, and samtools in various image/container formats

federated-learning

For the development of differentially private federated machine learning on the CanDIG data services

Jupyter Notebook

candig-server

The CanDIG V1 core application enabling data discovery and visualization for clinical & genomic data.

python_model_service

Example CanDIG service following best practices in python. API viewable at:

tyk-kc-demo

A toy demo showing how to use Tyk to protect an API, denying access to it without an OIDC token from a Keycloak instance, and enforcing rate limiting

candig_cnv_service

htsget_app

Htsget API implementation based on the Htsget protocol

candigv2_opa

Open Policy Agent

McFly

Go Layer for data

candig.github.io

Website for the CanDIG project

candig-opa

Developing relevant rego policies for OPA CanDIGv2

presto-graphql-testbed

Testbed for playing with presto and graphql on top of FHIR and variant databases

infrastructure

DevOps and other infrastructure notes and tools

tyk_api_setup

mesi-search

candig_authz_service

CanDIG Authorization Service.

rnaget_service

Implementation of GA4GH rnaget API

candig-server-external-dashboard

A React.js-based dashboard enabling data visualization for candig-server APIs.

candig-data-portal

A data analytics and visualization portal for V2 CanDIG services.

candig-schemas

Data models and API definitions

candigv2-ingest

Ingest microservice for CanDIGv2

candig_compose

deploy the candig stack with compose

tyk-keycloak-starter-kit

A Tyk+Keycloak-based solution for secure full-stack web application deployment.

GraphQL-interface