Explore @solgenomics Open Source projects

Breedbase and Solgenomics (@solgenomics)

solgenomics

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sgn

The code behind the Sol Genomics Network, Cassavabase and other Breedbase websites

SNPbinner

SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.

d3-pedigree-tree

A D3.js layout for visualizing pedigree trees.

Cview

A comparative genetic map viewer

cxgn-corelibs

Various Modules relating to SGN

Phenome

Scripts and libraries for managing the SGN Phenome database

starmachine

Shared management machinery for PSGI web apps running with Starman.

breedbase_dockerfile

The Dockerfiles for breeDBase

tomato_genome

Scripts and libraries for managing tomato genome data

biosource

BrAPI-js

JavaScript BrAPI Client with support for asynchronous interdependent calls.

sgn-devtools

tools for SGN developers

ITAG

Management modules for ITAG (International Tomato Annotation Group) pipeline

BrAPI-Pedigree-Viewer

yapri

Yet Another Perl R Inteface.

Tea

code and database for the expression query, mining, analysis, and visualization tools

DroneImageScripts

gff3_validator

Validate GFF3 files

Bio-GenomeUpdate

Tools for updating a genome assembly

javacyc

Java interface to SRI Pathway Tools

sgn-home

per-developer versioned home directories for miscellaneous work

BrAPI-Graphical-Filtering

Tool for filtering BrAPI ObservationUnits and Germplasm by Observation values

SMMID

Code and content behind smmid.org

CNSTools

Tools for conserved non-coding sequence identification

bio-geneticrelationships

VIGS

Stand Alone version of SGN VIGS Tool

perlcyc

Perl interface to Pathway Tools

bio-gff3

fast, low-level GFF3 manipulation in Perl

bioinfocourse

Repository for data and scripts used for the BTI Plant Bioinformatics course

art

testing

Scratch repo to test jitterbug + git integration

BrAPI-Study-Comparison

Intronfinder

Finds introns in transcript sequence

solbase

Standalone installation of a genome/phenome website and database.

Ambikon

core classes for Ambikon, used by both integration server and subsite APIs

nelsonlab

Chado-Feature-Pages

search and browse the details of features stored in a Chado database

bio-blast

low-level routines for dealing with BLAST formats and data

rPackages

solgenomics.github.com

Solgenomics Github Website

BrApp-Wrapper

HTML Wrapper for SGN BrApp Examples

Barcode-Code128

A Perl module to create barcodes in code 128 format, from

cassava

Cassavabase - A website for Cassava research

catalyst-view-bio-seqio

Use Bio::SeqIO as a Catalyst view.

bio-chado-loader

Load biological data into the Chado database with Bio::Chado::Schema

Ambikon-IntegrationServer

Request broker/proxy for web app integration. Early days still.

GenomicSelection

Code for the genomic selection module

brapi-fieldmap

editable field map implemented in Brava