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sgn
The code behind the Sol Genomics Network, Cassavabase and other Breedbase websitesSNPbinner
SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.d3-pedigree-tree
A D3.js layout for visualizing pedigree trees.Cview
A comparative genetic map viewercxgn-corelibs
Various Modules relating to SGNPhenome
Scripts and libraries for managing the SGN Phenome databasestarmachine
Shared management machinery for PSGI web apps running with Starman.breedbase_dockerfile
The Dockerfiles for breeDBasetomato_genome
Scripts and libraries for managing tomato genome databiosource
BrAPI-js
JavaScript BrAPI Client with support for asynchronous interdependent calls.sgn-devtools
tools for SGN developersITAG
Management modules for ITAG (International Tomato Annotation Group) pipelineBrAPI-Pedigree-Viewer
yapri
Yet Another Perl R Inteface.Tea
code and database for the expression query, mining, analysis, and visualization toolsDroneImageScripts
OpenCV scriptsgff3_validator
Validate GFF3 filesBio-GenomeUpdate
Tools for updating a genome assemblyjavacyc
Java interface to SRI Pathway Toolssgn-home
per-developer versioned home directories for miscellaneous workBrAPI-Graphical-Filtering
Tool for filtering BrAPI ObservationUnits and Germplasm by Observation valuesSMMID
Code and content behind smmid.orgCNSTools
Tools for conserved non-coding sequence identificationbio-geneticrelationships
VIGS
Stand Alone version of SGN VIGS Toolperlcyc
Perl interface to Pathway Toolsbio-gff3
fast, low-level GFF3 manipulation in Perlbioinfocourse
Repository for data and scripts used for the BTI Plant Bioinformatics courseart
SGN artworkBrAPI-Study-Comparison
Intronfinder
Finds introns in transcript sequencesolbase
Standalone installation of a genome/phenome website and database.Ambikon
core classes for Ambikon, used by both integration server and subsite APIsnelsonlab
Chado-Feature-Pages
search and browse the details of features stored in a Chado databasebio-blast
low-level routines for dealing with BLAST formats and datarPackages
R packagessolgenomics.github.com
Solgenomics Github WebsiteBrApp-Wrapper
HTML Wrapper for SGN BrApp ExamplesBarcode-Code128
A Perl module to create barcodes in code 128 format, fromcassava
Cassavabase - A website for Cassava researchbio-chado-loader
Load biological data into the Chado database with Bio::Chado::SchemaAmbikon-IntegrationServer
Request broker/proxy for web app integration. Early days still.GenomicSelection
Code for the genomic selection modulebrapi-fieldmap
editable field map implemented in Bravacatalyst-view-bio-seqio
Use Bio::SeqIO as a Catalyst view.Love Open Source and this site? Check out how you can help us