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RCSB PDB (@rcsb)

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mmtf-python

The python implementation of the MMTF API, decoder and encoder.

mmtf

The specification of the MMTF format for biological structures

py-rcsbsearchapi

Python interface for the RCSB PDB search API.

rcsb-saguaro

1D Feature Viewer

colorbrewer

🌈 Create color blind friendly color palettes in Java

py-mmcif

mmCIF Core Access Library

symmetry

🎡 Detect, analyze, and visualize protein symmetry

rcsb-saguaro-3d

mmtf-cpp

The pure C++ implementation of the MMTF API, decoder and encoder.

RNAView

RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westhof

ciftools-java

A Java library for handling text and BinaryCIF files.

mmtf-javascript

The javascript implementation of the MMTF format.

py-rcsb_db

RCSB Python Database Utility Classes

mmtf-java

The java implementation of the MMTF API, decoder and encoder.

mmtf-c

The c/c++ implementation of the MMTF API, decoder and encoder.

strucmotif-search

Real-time structure motif searching in protein 3D structures using an inverted index strategy

rcsb-api-tools

RCSB API javascript/TypeScript tools

rcsb-saguaro-app

RCSB Saguaro 1D Feature Viewer Web App

py-mmcif_demo

Demo using mmcif parser to parse PDBx/mmCIF-format files in the Protein Data Bank

spark_util

Convenience tools for working with Apache Spark in the context of PDB data.

cmviewjs

A JavaScript interactive contact map viewer

qsa

Quick Structural Alignment

py-rcsb-api

Python interface for RCSB.org API services

rcsb-pecos-app

py-rcsb_workflow

Python workflow entry points for database and search tools

zeppelin-notebooks

A repository of Zeppelin notebooks

coordinates-compression

This repository contains the compression methods described in the paper "Towards an efficient compression of 3D coordinates of macromolecular structures".

cpp-dict-pack

RCSB MMCIF Dictionary Suite

mmtf-spark-utils

PDB_ligand_quality_composite_score

Data for multivariate data analysis in constructing PDB ligand quality composite score

dataframes

📊 An (experimental) repository for sharing PDB data ready for data mining and analytics.

rcsb-search-tools

Request and parse data from the RCSB Search API

SnpsInPdb

supplemental material for a manuscript that is under review

review-NAR-Databases

Scripts to search database publication at Nucleic Acid Research for PDB keywords

py-rcsb_utils_insilico3d

RCSB utilities for accessing in silico 3D models and metadata from external data resources.

symmetry-benchmark

Benchmarks for testing the symmetry package

biozernike-validation

Data and scripts for training and benchmarking of BioZernike method

cc-regex

Fork of Henry Spencer's POSIX 1003.2 regular expression library

ffindex-java

FFindex is a very simple index/database for huge amounts of small files.

BioCaddiePilot32

protodomain-search

Search for subunits of tertiary psuedosymmetry that occur throughout fold space

rcsb-idmapper

IdMapper service extracted from Arches

rcsb-openfold

Scripts to run Openfold on GPU supercomputers

mmcif_website_file_assets

PDBx/mmCIF Resource Site Dictionary and Schema File Assets

rcsb-statistical-charts

Plotting distributions of PDB structure features

py-rcsb_utils_dictionary

RCSB dictionary method utilities

PDB-Outlier-Analysis

Public repo for data and code of PDB outlier analyses manuscript submitted to Sci Data

rcsb-charts

RCSB PDB charting library

py-rcsb_utils_dssp

Utility for calculating DSSP secondary structure entries for models in the RCSB PDB archive.

py-rcsb_utils_chem

Utilities for managing and searching PDB chemical components

rcsb-mojave-model

The RCSB data models