Discover rcsb/colorbrewer Open Source project by RCSB PDB (@rcsb)

The specification of the MMTF format for biological structures

mmtf

Shell

py-rcsbsearchapi

Python interface for the RCSB PDB search API.

rcsb-saguaro

1D Feature Viewer

mmCIF Core Access Library

py-mmcif

C++

symmetry

🎡 Detect, analyze, and visualize protein symmetry

rcsb-saguaro-3d

The pure C++ implementation of the MMTF API, decoder and encoder.

mmtf-cpp

C++

RNAView

RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westhof

PostScript

ciftools-java

A Java library for handling text and BinaryCIF files.

The javascript implementation of the MMTF format.

mmtf-javascript

JavaScript

py-rcsb_db

RCSB Python Database Utility Classes

The java implementation of the MMTF API, decoder and encoder.

mmtf-java

The c/c++ implementation of the MMTF API, decoder and encoder.

mmtf-c

strucmotif-search

Real-time structure motif searching in protein 3D structures using an inverted index strategy

RCSB API javascript/TypeScript tools

rcsb-api-tools

RCSB Saguaro 1D Feature Viewer Web App

rcsb-saguaro-app

Demo using mmcif parser to parse PDBx/mmCIF-format files in the Protein Data Bank

py-mmcif_demo

Convenience tools for working with Apache Spark in the context of PDB data.

spark_util

A JavaScript interactive contact map viewer

cmviewjs

JavaScript

qsa

Quick Structural Alignment

Python interface for RCSB.org API services

py-rcsb-api

rcsb-pecos-app

Python workflow entry points for database and search tools

py-rcsb_workflow

A repository of Zeppelin notebooks

zeppelin-notebooks

coordinates-compression

This repository contains the compression methods described in the paper "Towards an efficient compression of 3D coordinates of macromolecular structures".

RCSB MMCIF Dictionary Suite

cpp-dict-pack

CMake

mmtf-spark-utils

Data for multivariate data analysis in constructing PDB ligand quality composite score

PDB_ligand_quality_composite_score

📊 An (experimental) repository for sharing PDB data ready for data mining and analytics.

dataframes

rcsb-search-tools

Request and parse data from the RCSB Search API

supplemental material for a manuscript that is under review

SnpsInPdb

review-NAR-Databases

Scripts to search database publication at Nucleic Acid Research for PDB keywords

RCSB utilities for accessing in silico 3D models and metadata from external data resources.

py-rcsb_utils_insilico3d

Benchmarks for testing the symmetry package

symmetry-benchmark

biozernike-validation

Data and scripts for training and benchmarking of BioZernike method

Fork of Henry Spencer's POSIX 1003.2 regular expression library

cc-regex

ffindex-java

FFindex is a very simple index/database for huge amounts of small files.

BioCaddiePilot32

join

Search for subunits of tertiary psuedosymmetry that occur throughout fold space

protodomain-search

IdMapper service extracted from Arches

rcsb-idmapper

Scripts to run Openfold on GPU supercomputers

rcsb-openfold

Shell

mmcif_website_file_assets

PDBx/mmCIF Resource Site Dictionary and Schema File Assets

Shell

rcsb-statistical-charts

Plotting distributions of PDB structure features

RCSB dictionary method utilities

py-rcsb_utils_dictionary

Public repo for data and code of PDB outlier analyses manuscript submitted to Sci Data

PDB-Outlier-Analysis

rcsb-charts

RCSB PDB charting library

Utility for calculating DSSP secondary structure entries for models in the RCSB PDB archive.

py-rcsb_utils_dssp

Utilities for managing and searching PDB chemical components

py-rcsb_utils_chem

rcsb-mojave-model

The RCSB data models