Explore @ncsa Open Source projects

NCSA (@ncsa)

ncsa

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ssh-auditor

The best way to scan for weak ssh passwords on your network

ossec-tools

Scripts and integrations for OSSEC

NEAT

bhr-site

Blackhole Router Site

COVID19-mesa

A simple Python/Mesa model of COVID-19 contagion and possible measures

dumbno

No elephant flows - flow shunting for Arista switches using EOS API

bro-doctor

MayomicsVC

Variant Calling Pipeline in Cromwell/WDL

bro-clickhouse

bro-simple-scan

mlflow-slurm

Backend implementation for running MLFlow projects on Slurm

Scheduler

The aggregate job launcher of single-core or single-node applications on HPC sites

http-logger

http request logger for sinkhole purposes

bro-interface-setup

bhr-client-exabgp

BHR Block manager that uses ExaBGP

bro-is-darknet

oa4mp

Open Authorization for MyProxy

bhr-client

Client for the BHR site

bro-cluster-in-a-box-setup

xcat-tools

Useful tools for xCAT

charts

Helm charts for software developed at NCSA (as well as some dependencies)

bhr-bro

Bro integration for the BHR toolset

nagios-plugins

islet

Isolated, Scalable, & Lightweight Environment for Training

psync

Parallel Synchronization For Locally Mounted File Systems

traefik-certmanager

Create Certificates from IngressRoutes

ameriflux-pipeline

AmeriFlux Pipeline Repository

NCSA-Genomics_MLCC

Deep autoencoder for unsupervized multi-label cancer classification.

Swift-T-Variant-Calling

sans-holiday-hack-2016

SANS Holiday Hack 2016

Sentieon_DNASeq_Benchmarking

Benchmarking scripts

hydro_documentation

NCSA Hydro System Documentation

bro-atomic-rotate

Rotate bro logs atomically and serially

parfu_archive_tool

Parfu tar-like MPI tool for creating or extracting directory tree archives. Devel-branch version (0.5.1) is tar-compatible; earlier versions are not.

swsuite

bro-zeromq-writer

Bro plugin that provides a ZeroMQ log writer.

ncsa-shib-idp

Shibboleth Identity Provider (IdP) 4 for NCSA built on InCommon's Trusted Access Platform Docker Container

puppet-spectrumscale

Puppet module to install SpectrumScale (GPFS) on a node, add it to a GPFS cluster, and, optionally, mount some filesets.

DRYML

Don't Repeat Yourself Machine Learning: A Machine Learning library to reduce code duplication, and automate testing.

Jupyter Notebook

react-template

GATK_Benchmarking

Scripts to benchmark computational performance of GATK3.8 and GATK4

control-repo

GenomicsCortextVarNextflow

radiant-cluster

Terraform and other scripts to start kubernetes cluster on radiant.

CPRHD_WNV_USA_SWMM

Storm Water Management Model - Green Infrastructure

Jupyter Notebook

-swsuite-CIP-UpdatesV2

Update work done on the swsuite by the Fall2022 CIP interns

pylut

Python Lustre Tools

clowderjs

Node.js library for Clowder

hpc-conda-envs

Conda environmental files for HPC clusters

CytologyML

A classification engine for cytology data

Polyglot

radiant-cluster-template

phyloflow

Phylogenic tree computation and packaging with Docker, WDL

security-lib

A general repository of code security and building secure applications

datawolf

An open source scientific workflow system that simplifies the integration of data and modeling tools to support research and enable cross disciplinary integration to produce targeted outputs that address particular engineering and educational needs.

dns-infra-check

puppet-profile_monitoring

NCSA Common Puppet Profiles - configure standard monitoring of host

puppet-profile_backup

NCSA Common Puppet Profiles - configure NCSA Service backups

puppet-profile_audit

NCSA Common Puppet Profiles - configure auditing functionality

puppet-mysql_orchestrator

Puppet module to install and configure the MySQL orchestrator

puppet_deployment

Deploy a new puppet master service.

GREG

General Roofline Evaluation Gadget

lci-scripts

Scripts and code for the LCI Workshop series

sinfo_mon

Sends notifications when Slurm compute nodes are down.

CustomImageBuilder

TGI_RAILS_Documentation

puppet-profile_selinux

NCSA Common Puppet Profiles - configure the stats of SELinux

crypto-java8

Tools for security using Java 8

puppet-profile_puppet_master

NCSA Common Puppet Profiles - basic puppet master setup

sdaiakeys

issues

Want to join the NCSA Organization? Have a question for the team? Ask here.

jenkins-globus-online-workflow

A Globus Online test workflow to use with Jenkins. The workflow verifies basic endpoint functionality.

puppet-profile_lustre_client

NCSA Common Puppet Profiles - install configure Lustre client

sdaia

The SDAIA project provides a secure, fast, and decentralized model for disseminating threat intelligence data.

OOD-JupyterLab

Custom version of the Open OnDemand Jupyter Lab app.

syswipe

Scrub disks and factory reset a server when it is decommissioned.

puppetserver-enc

Setup and manage a database to use for Puppet External Node Classifier

puppet-openafs

Puppet Module to install and configure OpenAFS

Delta-OOD-JupyterLab

puppet-profile_system_auth

NCSA Common Puppet Profiles - configure standard system authentication

puppet-profile_allow_ssh_from_bastion

myproxy

myproxy fork - work in progress

pcapblackout

dumbno-client-go

datacarousel

Data Carousel for HDF5 Data Archived in AWS Glacier

bw-new-user-training

Blue Waters New User Training

puppet-profile_timezone

Puppet profile for configuring time-zone

jiracmdline

Command Line Interface to JIRA

puppet-slurm

Puppet module for configuring Slurm workload manager

AttackTagger

Jupyter Notebook

puppet-profile_firewall

NCSA Common Puppet Profiles - basic firewall config

Genomics_MGC_VariantCalling_Nextflow

archi_tools

CPRHD_SES

Jupyter Notebook

outlook-scheduler

Schedule events in Outlook 365

bhr-source-bhr

puppet-profile_rsyslog

NCSA Common Puppet Profiles - configure rsyslog client or relay for NCSA

puppet-profile_haproxy

NCSA Common Profiles - Basic haproxy service setup

containers-on-bw

CPRHD_WNV_GI

Center for racial health disparities -- West Nile Virus -- Green Infrastructure project

Jupyter Notebook