@metagenlab
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metagenlab

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  • Stars
    star
    194
  • Global Org. Rank 41,081 (Top 14 %)
  • Registered about 7 years ago
  • Most used languages
    Python
         57.1 %
    HTML
         14.3 %
    Nextflow     14.3 %
    R
         7.1 %
    Perl
         7.1 %

Top repositories

1

mummer2circos

Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments
Python
95
star
2

zDB

zDB: comparative bacterial genomics made easy
HTML
27
star
3

MeSS

Snakemake pipeline for simulating shotgun metagenomic samples
Python
17
star
4

assembly_finder

snakemake-powered cli to download genomes using NCBI datasets
Python
10
star
5

locus2genoplotr

Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram
Python
10
star
6

zAMP

zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
R
8
star
7

diag_pipelines

Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.
Python
6
star
8

chlamdb

chlamdb.ch website code
HTML
5
star
9

TPutils

Python
4
star
10

microbiome_shotgun_pipeline

Snakemake pipeline for shotgun metagenomics
Python
3
star
11

GENCOV

Python
3
star
12

updated_simulate_PCR

Corrected version of simulate_PCR (https://doi.org/10.1186/1471-2105-15-237)
Perl
3
star
13

MASRES

Nextflow
2
star
14

nanopore

Nextflow
1
star