Donald Danforth Plant Science Center (@danforthcenter)
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Top repositories

1

plantcv

Plant phenotyping with image analysis
Python
655
star
2

plantcv-workshop

PlantCV Workshops
Jupyter Notebook
15
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3

plantcv-v2-paper

PlantCV image analysis scripts used in the PlantCV v2.0 paper
Jupyter Notebook
10
star
4

apps-phenotyping

The following are scripts and instruction necessary to set up 4 Raspberry Pi Powered Imaging Platforms
Jupyter Notebook
7
star
5

plantcv-binder

A repository for interactive PlantCV documentation using Binder
Jupyter Notebook
6
star
6

outreach

Repository for Outreach Activities at DDPSC
5
star
7

phenome2020-workshop

Phenome 2020 Digital Phenotyping workshop materials
Jupyter Notebook
5
star
8

plantcv-tutorial-v4-VIS-single-plant

PlantCV Tutorial using release-4.0 for single plant, VIS image (RGB) analysis
Jupyter Notebook
4
star
9

bioinformatics

The Donald Danforth Plant Science Center Bioinformatics Core Facility public repository
Nextflow
4
star
10

plantcv-nappn2021-workshop

NAPPN 2021 Conference PlantCV virtual workshop materials
Jupyter Notebook
4
star
11

pcvr

R functions for use with plantCV output
R
3
star
12

htcondor-tools

A collection of scripts for building and running HTCondor jobs and workflows
Python
3
star
13

plantcv-seeds

Seed phenotyping with PlantCV
Jupyter Notebook
3
star
14

plantcv-tutorial_leaf_instance_segmentation

Jupyter Notebook
2
star
15

plantcv-tutorial-morphology

Jupyter Notebook
2
star
16

brachypodium-heat-drought-paper

PlantCV python scripts for image analysis; R scripts for data filtering, organizing, and analysis; shell scripts for SNP calling and population structure estimation; input data files for all analyses
R
2
star
17

plantcv-stomata-tutorial

interactive tutorial for analyzing microscopy images of stomata using PlantCV
Jupyter Notebook
2
star
18

plantcv-tutorial-pollen-germination

Jupyter Notebook
1
star
19

plantcv-dev-scripts

Development image analysis scripts
Python
1
star
20

plantcv-tasselyzer-tutorial

Jupyter Notebook
1
star
21

persistent_homology

Persistent homology
Python
1
star
22

quinoa-pollen-germination

R
1
star
23

plantcv-annotate

add-on package for PlantCV annotation tools
Python
1
star
24

Eveland_NSF_Outreach

Repository for Outreach Activities
Jupyter Notebook
1
star
25

plantcv-tutorial-germination

Notebook for performing germination studies using plantCV
Jupyter Notebook
1
star
26

plantcv-tutorial-watershed

watershed tutorial
Jupyter Notebook
1
star
27

UFMG-PlantCV-Workshop

Jupyter Notebook
1
star
28

plantcv-terra

PlantCV scripts for analyzing data from the TERRA-REF project
Jupyter Notebook
1
star
29

plantcv-tutorial-threshold

Tutorial for understanding Thresholding using PlantCV.
Jupyter Notebook
1
star
30

plantcvR

R
1
star
31

plantcv-tutorial-seeds

seed workflow tutorial
Jupyter Notebook
1
star
32

FiReMAGE

R
1
star
33

data-science-tools

Data Science Tools
Python
1
star
34

quinoa-trait

Gehan Lab Shiny App to Explore Quinoa Phenotype Data
R
1
star
35

diel-explorer

Gehan Lab shiny app to graph JTK Cycle Output
R
1
star
36

pgwasdbc

R Package that handles and maintains a connection to GWAS database.
R
1
star
37

plantcv-hyperspectral

Hyperspectral analysis tools in PlantCV
Python
1
star
38

plantcv-setaria-molplant

PlantCV image analysis scripts used in Fahlgren N, Feldman M, Gehan MA, Wilson MS, Shyu C, Bryant DW, et al. A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria. Mol Plant. 2015;8: 1520–1535.
HTML
1
star
39

plantcv-tutorial-hyperspectral-smf-detection

Jupyter Notebook
1
star
40

plantcv-geospatial

Geospatial add-on package to PlantCV
Python
1
star
41

heritable-highCO2-response

R
1
star