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plantcv
Plant phenotyping with image analysisplantcv-workshop
PlantCV Workshopsplantcv-v2-paper
PlantCV image analysis scripts used in the PlantCV v2.0 paperapps-phenotyping
The following are scripts and instruction necessary to set up 4 Raspberry Pi Powered Imaging Platformsplantcv-binder
A repository for interactive PlantCV documentation using Binderoutreach
Repository for Outreach Activities at DDPSCphenome2020-workshop
Phenome 2020 Digital Phenotyping workshop materialsplantcv-tutorial-v4-VIS-single-plant
PlantCV Tutorial using release-4.0 for single plant, VIS image (RGB) analysisbioinformatics
The Donald Danforth Plant Science Center Bioinformatics Core Facility public repositoryplantcv-nappn2021-workshop
NAPPN 2021 Conference PlantCV virtual workshop materialspcvr
R functions for use with plantCV outputhtcondor-tools
A collection of scripts for building and running HTCondor jobs and workflowsplantcv-seeds
Seed phenotyping with PlantCVplantcv-tutorial_leaf_instance_segmentation
plantcv-tutorial-morphology
brachypodium-heat-drought-paper
PlantCV python scripts for image analysis; R scripts for data filtering, organizing, and analysis; shell scripts for SNP calling and population structure estimation; input data files for all analysesplantcv-stomata-tutorial
interactive tutorial for analyzing microscopy images of stomata using PlantCVplantcv-tutorial-pollen-germination
plantcv-dev-scripts
Development image analysis scriptsplantcv-tasselyzer-tutorial
persistent_homology
Persistent homologyquinoa-pollen-germination
Eveland_NSF_Outreach
Repository for Outreach Activitiesplantcv-tutorial-germination
Notebook for performing germination studies using plantCVplantcv-tutorial-watershed
watershed tutorialUFMG-PlantCV-Workshop
plantcv-terra
PlantCV scripts for analyzing data from the TERRA-REF projectplantcv-tutorial-threshold
Tutorial for understanding Thresholding using PlantCV.plantcvR
plantcv-tutorial-seeds
seed workflow tutorialFiReMAGE
data-science-tools
Data Science Toolsquinoa-trait
Gehan Lab Shiny App to Explore Quinoa Phenotype Datadiel-explorer
Gehan Lab shiny app to graph JTK Cycle Outputpgwasdbc
R Package that handles and maintains a connection to GWAS database.plantcv-hyperspectral
Hyperspectral analysis tools in PlantCVplantcv-setaria-molplant
PlantCV image analysis scripts used in Fahlgren N, Feldman M, Gehan MA, Wilson MS, Shyu C, Bryant DW, et al. A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria. Mol Plant. 2015;8: 1520β1535.plantcv-tutorial-hyperspectral-smf-detection
plantcv-geospatial
Geospatial add-on package to PlantCVheritable-highCO2-response
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