Swiss TPH (@SwissTPH)
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SwissTPH

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Top repositories

1

openmalaria

A simulator of malaria epidemiology and control
C++
75
star
2

pyfhirsdc

Python scripts to help with the mapping of L2 layer to L3
Python
12
star
3

repvisforODK

Generic R package to analyse ODK data
HTML
10
star
4

OpenCOVID

Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.
R
10
star
5

openfn-openhim-mediator

Js mediator to use openfn scripts in openHIM
JavaScript
7
star
6

AnophelesModel

An R package to quantify the impact of vector control interventions according to mosquito species characteristics
R
5
star
7

timci

Tools for Integrated Management of Childhood Illness
HTML
4
star
8

WHO-VA

Maintenance of the WHO 2022 Verbal Autopsy Instrument and Documentation
3
star
9

XLSX-pre-commit-and-post-merge

Pre-commit, pre-merge and post merge python3 scripts to support versioning in Excel
Python
3
star
10

TBRU_serialTB

Population dynamics of Mycobacterium tuberculosis within hosts during treatment.
Jupyter Notebook
3
star
11

VivaxModelR

Simulations and calculations on a compartmental model for Plasmodium Vivax dynamics
R
2
star
12

r-openMalariaUtilities

Work with OpenMalaria from R
R
2
star
13

CHWplacement

R
2
star
14

Mirth-Channels

Mirth Channels
2
star
15

openhds

Meta repository for openhds components
2
star
16

tricc

Tool for rapid implementation of clinical content (TRICC) for CDSS/XFORM
Python
2
star
17

data-diff

Compare data sets
Python
2
star
18

openmalaria.tools

Tools for SwissTPH/openmalaria
Python
2
star
19

ZanzibarI3

Malaria transmission model for studying imported, introduced and indigenous cases
Jupyter Notebook
1
star
20

TPP_workflow

A workflow to quantitatively define target product profiles of novel tools against infectious diseases with machine learning and disease transmission models
R
1
star
21

XLSA

Sensitivity analyis for models implemented in Excel
Python
1
star
22

healthcrowd-ui

JavaScript
1
star
23

Pureser

ODK to Print
Swift
1
star
24

AP-Health-Effects

Graphical overview of the (causal and likely causal) health effects of air pollution.
JavaScript
1
star
25

openhds-sim

openHDS test data generator
Python
1
star
26

odk_planner

PHP
1
star
27

mosquito-movement-spatial-repellent-method

method for secondary analysis of trial data
C++
1
star
28

TBRU_L2Africa

Phylogeography of Lineage 2 in Africa.
1
star
29

COVID_measures_by_canton

Repository for the data sets containing the timings on the COVID measures implemented by canton.
R
1
star
30

commcare-cases-dhis2-events

Routine ETL for CommCare cases --> DHIS2 events
Python
1
star
31

TBRU_RIFcost

Jupyter Notebook
1
star