Matt Johnson (@mossmatters)
github

mossmatters

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Top repositories

1

HybPiper

Recovering genes from targeted sequence capture data
Python
92
star
2

phyloscripts

Helper scripts for processing and visualization of phylogenetics datasets
Jupyter Notebook
24
star
3

Angiosperms353

HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm
Jupyter Notebook
14
star
4

KewHybSeqWorkshop

Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.
Python
14
star
5

MJPythonNotebooks

Visualizing gene tree conflict using Phyparts, and ETE3
Jupyter Notebook
13
star
6

Phylo_Comp_Methods_Shiny

Developing an app to demonstrate phylogenetic comparative methods in R.
R
5
star
7

BIOL6304

Principles of Phylogenetics Texas Tech University
TeX
5
star
8

Structure-Pipeline

Pipeline to run structure on multiple values of K, summarize results with CLUMPP, and create barplot in R
5
star
9

DPLSim

Pipeline for GWAS simulation and formatting for multiple analysis methods
Python
3
star
10

genomics-scripts

Single-use scripts for genomics. May update later into a full package.
Python
1
star
11

introToCmdLine

command line tutorial for bioinformatics
TeX
1
star