Discover @joelnitta Open Source projects

Joel Nitta (@joelnitta)

joelnitta

Stars
120
Global Rank 182,013 (Top 7 %)
Followers 71
Registered over 9 years ago
Most used languages

R
78.6 %

Dockerfile
7.1 %

HTML
7.1 %

TeX
3.6 %

JavaScript
3.6 %
Location 🇯🇵 Japan
Country Total Rank 4,288
Country Ranking

R
13

TeX
167

Dockerfile
688

HTML
2,435

JavaScript
3,341

taxastand

Standardize taxonomy across different data sources

pleurosoriopsis

Growth Dynamics of the Independent Gametophytes of Pleurorosiopsis makinoi (Polypodiaceae)

docker-packrat-example

Example of installing R packages to a docker image with packrat

joelnitta-home

Personal website of Joel Nitta

penguins-targets

Demo repo showing how to use {targets} to analyze penguin data

dovetail

targets_bioinfo_example

Example bioinformatics workflow with targets, conda, and docker

ms_template

An example repository for automated rendering of scientific manuscripts

targets_vcf_example

Example variant calling workflow using R targets package

gbfetch

Fetch! (GenBank sequences)

japan_ferns_spatial_phy

Spatial phylogenetics of Japanese ferns

docker-renv-example

baitfindR_example

Example of how to use baitfindR

baitfindR

Find baits using the Yang and Smith (2014) phylogenomic analysis pipeline

rmdref

Reference management for Rmarkdown

buoyant-barnacle-dt

Example Carpentries lesson for demoing dovetail

shell-novice-docker

Docker image for teaching shell-novice

jntools

Various and sundry tools for data analysis in R

canopylife

Life in the canopy: Community trait assessments reveal substantial functional diversity among fern epiphytes

readmedown

Rmarkdown for (data) readme files

website-trans-test

https://joelnitta.github.io/website-trans-test/

bsj_2022

Slides for presentation at Botanical Society of Japan 2022 conference

sqanti3-docker

A docker image to run SQANTI3

nectandra_ferns

A taxonomic and molecular survey of the pteridophytes of the Nectandra Cloud Forest Reserve, Costa Rica

workflow-meetup-targets-intro

Introduction to {targets} R package for workflow meetup

japan_ferns_spatial_phy_cache

Targets data cache for japan_ferns_spatial_phy

biopack-targets-intro

Presentation about {targets} R package for biopackathon meetup

japan_ferns_review

An update and reassessment of fern and lycophyte diversity data in the Japanese Archipelago

mtgr

R package for analyzing Magic: The Gathering data