Discover @freeman-lab Open Source projects

Jeremy Freeman (@freeman-lab)

freeman-lab

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Registered almost 12 years ago
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Python
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MATLAB
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Jupyter Notebook
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Location 🇺🇸 United States
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control-panel

embeddable panel of inputs for parameter setting

pixel-grid

render a grid of small squares

spark-ml-streaming

Visualize streaming machine learning in Spark

minidocs

build a minimalist site for your documentation

minidux

just like redux but tiny

pdf-to-png

render a PDF to a PNG with electron

embed-images

embed image files in markdown as base64

extrude

turn a 2d shape into 3d with extrusion

zarr-js

load chunked binary zarr files in javascript

tinycloud

minimal module for launching compute clusters

myopts

convert python docstrings with options into markdown

pim

friendly command-line tool for initializing python packages

sound-party

visual + audio experiments

gl-scene

build 3d scenes with shapes and lights using stack.gl

transformist

simple transformations in the plane

array-olympics

Comparing ndarray abstractions for complex workflows

showit

simple and sensible display of images in python

spark-janelia

scripts for using spark on janelia's cluster

hxdx

super simple connecter for redux-style dispatching

hdf5-and-spark

Example glue code for loading HDF5 data into Spark

metamers

code for generating visual metamers

station

simple context manager for computational engines

good-old-fashioned-redux-example

redux example using good old fashioned javascript

cascade

Library for fitting nonlinear neural encoding models

zebra

Analysis code and example iPython notebooks for zebrafish imaging

Jupyter Notebook

spark-demo

icecloud

Launch a distributed build server on cloud compute

talk-csvconf-may-2016

talk at csvconf 2016

awesome-restaurants

An opinionated list of restaurants

whisky

Web app in meteor and d3 for browsing cascade model analyses

gl-normal-material

normal material for 3d rendering

glsl-light

GLSL struct for a light source

thefreemanlab.com

subunits

Code for fitting subunit models

regional

simple manipulation and display of spatial regions in python

clicloud

composable cli tool for the cloud family

gl-material

resuable 3d materials for stack.gl

selectify

generic array for manipulating styles and attributes

crtrdg-tty

tty keyboard module designed for games

glsl-basic-lighting

basic GLSL function for applying lights to materials

bar-menu

reusable components for a filterable bar menu

jtheory

weekly meeting group for computation and theory at janelia

mesoscope-workshop

workshop on analyzing data from the two-photon mesoscope

Jupyter Notebook

muffle

silence output from external process

checkist

Minimal module for argument checking

gl-lambert-material

lambert material for 3d rendering

crtrdg-touch

touch module designed for crtrdg.js http://crtrdg.com

plotit

simple and sensible display of charts in python

minislides

build a minimalist slidedeck from markdown

pipeit

tiny package for making pipelines in python

talk-janelia-winter-2015

Talk at Janelia in Winter 2015

simple-auth

example of relatively simple password protection with next.js

deep-neurophysiology

comparing neural networks and neurons

cshl-summer-2015

Lecture at CSHL summer course on neural data analysis

tuning

compute linear and nonlinear tuning curves

Jupyter Notebook

resource-list

An opinionated list of resources for modern scientific computing

gl-light

create 3d lights for use with stack.gl

talk-bids-fall-2015

Talk at Berkeley Institute for Data Science in Fall 2015

imaging-pipeline

a pipeline for calcium imaging data built out of modular components

tinycloud-aws

cloud driver module for amazon web services (WIP)

vega-playground

Simple tests for playing with vega embedding and rendering

mantis

Web app in meteor and d3 for data analysis and stimulation