Discover freeman-lab/minidux Open Source project

render a grid of small squares

237

pixel-grid

Visualize streaming machine learning in Spark

201

spark-ml-streaming

build a minimalist site for your documentation

177

minidocs

render a PDF to a PNG with electron

135

pdf-to-png

turn a 2d shape into 3d with extrusion

extrude

embed image files in markdown as base64

embed-images

load chunked binary zarr files in javascript

zarr-js

minimal module for launching compute clusters

tinycloud

convert python docstrings with options into markdown

myopts

friendly command-line tool for initializing python packages

pim

visual + audio experiments

sound-party

simple transformations in the plane

transformist

build 3d scenes with shapes and lights using stack.gl

gl-scene

Comparing ndarray abstractions for complex workflows

array-olympics

showit

simple and sensible display of images in python

scripts for using spark on janelia's cluster

spark-janelia

super simple connecter for redux-style dispatching

hxdx

Example glue code for loading HDF5 data into Spark

hdf5-and-spark

metamers

code for generating visual metamers

MATLAB

station

simple context manager for computational engines

redux example using good old fashioned javascript

good-old-fashioned-redux-example

Library for fitting nonlinear neural encoding models

cascade

MATLAB

zebra

Analysis code and example iPython notebooks for zebrafish imaging

Jupyter Notebook

spark-demo

Spark demo

icecloud

Launch a distributed build server on cloud compute

talk-csvconf-may-2016

talk at csvconf 2016

An opinionated list of restaurants

awesome-restaurants

whisky

Web app in meteor and d3 for browsing cascade model analyses

normal material for 3d rendering

gl-normal-material

GLSL struct for a light source

glsl-light

GLSL

thefreemanlab.com

Code for fitting subunit models

subunits

MATLAB

regional

simple manipulation and display of spatial regions in python

composable cli tool for the cloud family

clicloud

resuable 3d materials for stack.gl

gl-material

generic array for manipulating styles and attributes

selectify

tty keyboard module designed for games

crtrdg-tty

basic GLSL function for applying lights to materials

glsl-basic-lighting

GLSL

bar-menu

reusable components for a filterable bar menu

weekly meeting group for computation and theory at janelia

jtheory

mesoscope-workshop

workshop on analyzing data from the two-photon mesoscope

Jupyter Notebook

muffle

silence output from external process

Minimal module for argument checking

checkist

lambert material for 3d rendering

gl-lambert-material

GLSL

crtrdg-touch

touch module designed for crtrdg.js http://crtrdg.com

simple and sensible display of charts in python

plotit

minislides

build a minimalist slidedeck from markdown

tiny package for making pipelines in python

pipeit

Talk at Janelia in Winter 2015

talk-janelia-winter-2015

example of relatively simple password protection with next.js

simple-auth

comparing neural networks and neurons

deep-neurophysiology

cshl-summer-2015

Lecture at CSHL summer course on neural data analysis

compute linear and nonlinear tuning curves

tuning

Jupyter Notebook

resource-list

An opinionated list of resources for modern scientific computing

gl-light

create 3d lights for use with stack.gl

Talk at Berkeley Institute for Data Science in Fall 2015

talk-bids-fall-2015

a pipeline for calcium imaging data built out of modular components

imaging-pipeline

cloud driver module for amazon web services (WIP)

tinycloud-aws

Simple tests for playing with vega embedding and rendering

vega-playground

Web app in meteor and d3 for data analysis and stimulation

mantis