Constantin Pape (@constantinpape)
github

constantinpape

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  • Stars
    star
    283
  • Global Rank 93,171 (Top 4 %)
  • Followers 107
  • Following 7
  • Registered over 11 years ago
  • Most used languages
    Python
         75.0 %
    C++
         10.7 %
    Jupyter Notebook
         10.7 %
    CMake     3.6 %
  • Location ๐Ÿ‡ฉ๐Ÿ‡ช Germany
  • Country Total Rank 4,795
  • Country Ranking
    CMake     419
    C++
         792
    Jupyter Notebook
         834
    Python
         998

Top repositories

1

z5

Lightweight C++ and Python interface for datasets in zarr and N5 format
C++
94
star
2

torch-em

Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
Python
72
star
3

elf

Utils and convenience functions for large-scale bio-image analysis.
Python
33
star
4

cluster_tools

Distributed segmentation for bio-image-analysis
Python
30
star
5

heimdall

Python based viewer for large mulit-dimensional datasets.
Python
20
star
6

pybdv

python tools for BigDataViewer
Python
14
star
7

affogato

Affinity based segmentation algorithms and tools
Jupyter Notebook
9
star
8

training-deep-learning-models-for-vison

Jupyter Notebook
8
star
9

rf_benchmarks

Benchmarking Random Forests for ilastik.
Python
5
star
10

dl-teaching-resources

Collection of teaching material for deep learning for (biomedical) image analysis
Jupyter Notebook
4
star
11

machine_learning

Repo for machine learning project.
Python
3
star
12

cremi_tools

Python
3
star
13

3d-unet-benchmarks

Python
3
star
14

dalle-mini-poster

Create posters from dalle-mini / craiyon screenshots
Python
2
star
15

skeletor

Tools and wrappers for skeletonization.
Python
2
star
16

skanner

Tools for skeleton analysis with skan
Python
1
star
17

deep-micro-val

Evaluating segmentation methods for common cell segmentation problems
Python
1
star
18

z5py-benchmarks

ASV benchmark suite for z5 / z5py
Python
1
star
19

DenseReconstruction

Python
1
star
20

mutex-watershed

The mutex watershed for image segmentation
C++
1
star
21

pyopengm

Modern python wrapper for opengm
CMake
1
star
22

stuff_master

Misc. programed during master / neuro segmentation
Python
1
star
23

boots

out of the box segmentation
Python
1
star
24

gpu_benchmarks

Python
1
star
25

minitorch

Lightweight torch wrapper for bio-medical segmentation
Python
1
star
26

pyaffine

Affine transformations in python (prototype)
Python
1
star
27

quantile_tests

Comparing calculation of quantiles with boost and vigra accumulators
C++
1
star
28

paintera_tools

Tools for generating, curating and merging paintera datasets
Python
1
star