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z5
Lightweight C++ and Python interface for datasets in zarr and N5 formattorch-em
Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.elf
Utils and convenience functions for large-scale bio-image analysis.cluster_tools
Distributed segmentation for bio-image-analysisheimdall
Python based viewer for large mulit-dimensional datasets.pybdv
python tools for BigDataVieweraffogato
Affinity based segmentation algorithms and toolstraining-deep-learning-models-for-vison
rf_benchmarks
Benchmarking Random Forests for ilastik.dl-teaching-resources
Collection of teaching material for deep learning for (biomedical) image analysismachine_learning
Repo for machine learning project.cremi_tools
3d-unet-benchmarks
dalle-mini-poster
Create posters from dalle-mini / craiyon screenshotsskeletor
Tools and wrappers for skeletonization.skanner
Tools for skeleton analysis with skandeep-micro-val
Evaluating segmentation methods for common cell segmentation problemsz5py-benchmarks
ASV benchmark suite for z5 / z5pyDenseReconstruction
pyopengm
Modern python wrapper for opengmstuff_master
Misc. programed during master / neuro segmentationboots
out of the box segmentationgpu_benchmarks
pyaffine
Affine transformations in python (prototype)quantile_tests
Comparing calculation of quantiles with boost and vigra accumulatorsminitorch
Lightweight torch wrapper for bio-medical segmentationpaintera_tools
Tools for generating, curating and merging paintera datasetsLove Open Source and this site? Check out how you can help us