Thomas Akam (@ThomasAkam)
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ThomasAkam

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Top repositories

1

photometry_preprocessing

Fiber photometry data preprocessing - denoising, photobleaching and motion correction.
Jupyter Notebook
18
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2

Point_Grey_Bonsai_multi_camera_acquisition

Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.
Python
13
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3

Two-step_explicit_knowledge

Analysis code and data for Castro-Rodrigues, Akam et al. Nature Human Behaviour 2022.
Python
4
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4

Two-step_ACC

Analysis code for Akam et al. Neuron 2021 - The anterior cingulate cortex predicts future states to mediate model-based action selection.
Python
3
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5

data_synchronisation

Example code for synchronising pyControl behavioural data with pyPhotometry recordings.
Jupyter Notebook
1
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6

PFC-BG_model

Code for implementing neural network model of PFC-basal-ganglia circuit from Blanco-Pozo et al 2023.
Python
1
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7

active_commutator

A simple open source active commutator for Open Ephys / Intan electrophysiology systems.
Python
1
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8

CNMF-E_mat2npy

Converting CNMF-E output files to Numpy.
MATLAB
1
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