yodeng/srautils

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1
Language
Python
License
MIT License
Created almost 2 years ago
Updated over 1 year ago

yodeng/srautils

yodeng

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fast utils for fetch and dump NCBI SRA archive raw data

runjob

runjob is a program for managing a group of related jobs running on a compute cluster

bpan

baidu netdisk command-line api

hget

interruptable, resumable download accelerator

fsplit

for split fastq from mix bcl or fastq data by barcode/index

hpc-blast

divide blast query and run all chunks across HPC or localhost in parallelly

ccbuild

build *.py file to *.so for python source code protection

conda-local

channel cached conda application

Remove-duplicate-fasta

Python script to remove duplicate fasta sequences

text2bin

tools for encrypt/decrypt text file

qsubwt

Simple wrapper for qsub which provides the functionality of the '-sync' option

hsync

a hsyncd server for remote file synchronize base on async https protocol

ezmonitor

program for monitoring MEM and CPU Usage of some process and its children process.

oss-docker-registry

docker registry on oss

supervisor

rna-seq

scripts for rna-seq flow

pylicense

make license for python codes

yodeng

rna-seq2

simpleresource

some decorators of resource limite for python runtime

raw2clean

quality countrol for raw fastq sequences

writeXlsx

simply to write office excel and define format

ossfs

ossfs mount in docker container

EasyCrypt

simple encrypt and decrypt for text file, strings and json-object

basedocker

base-image

base docker image

repFind

For finding the tendom repeats in both ends of you sequence.

django-project-auto-install

auto build and install django project

gcc-install

for build, install, update gcc/g++/c++ compile tools in rootless

igv-web

goutils