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Drawing Bayesian networks, graphical models, tensors, technical frameworks, and illustrations in LaTeX.

Awesome LaTeX drawing

MIT License repo size GitHub stars

Made by Xinyu Chen • 🌐 https://xinychen.github.io

awesome-latex-drawing is a collection of 20+ academic drawing examples for using LaTeX, including Bayesian networks, function plotting, graphical models, tensor structure, and technical frameworks. [Blog post on Medium]

Description

LaTeX is a high-quality typesetting system, and it is available as a free software. In recent years, it is very popular for creating and drawing academic graphics via LaTeX. This is because that LaTeX is able to draw many complicated graphics containing special symbols and math equations. It is really good for using LaTeX to draw certain graphics in your research.This project introduces some graphics that created by using LaTeX. It would be easy to follow the examples with a popular online LaTeX system - Overleaf. If you are interested, welcome to use Overleaf and reproduce our examples. The Overleaf is available at overleaf.com, please feel free to try it.

Contents

Table of Examples


Usage

Open overleaf.com in your Chrome.

It is not necessary to open each file in this repository because you can just follow this readme document.


Gallery

Looking for some good LaTeX drawing examples? Here are 30+ graphics for showing how to draw in LaTaX.


Bayesian Networks

LaTeX provides some powerful domain-specific packages and tools like tikz to enable flexible graphical models. Bayesian networks represent a family of graphical models consisting of variables (usually denoted by nodes) and dependency relationships (usually denoted by arrows). Fortunately, tikz has a specific library for drawing Bayesian networks and directed factor graphs.

Another toolbox in Python: https://docs.daft-pgm.org/en/latest/

Bayesian Tensor Factorization

[Example 1]

This example is from the following paper:

drawing which shows the Bayesian network of Bayesian CP factorization (BCPF) model. To draw this Bayesian network example, there are some preliminaries to follow:
  • preamble codes:
    1. define the documentclass as standalone, e.g., \documentclass[border = 0.1cm]{standalone} with 0.1cm border,
    2. use the package tikz, i.e., \usepackage{tikz}, and use tikz library like \usetikzlibrary{bayesnet} which is an important tool for drawing Bayesian networks and directed factor graphs,
    3. set the tikz style by using the \tikzstyle{} command,
    4. use math equation environments including \usepackage{amsfonts, amsmath, amssymb}.
  • body codes:
    1. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    2. use \node to define nodes and text boxes in the Bayesian network,
    3. use \path to define arrows in the Bayesian network,
    4. use \plate to define plates in the Bayesian network.

Please click on the image and check out the source code.


  • Open BGCP.tex in your overleaf project, then you will see the following pictures about BGCP (Bayesian Gaussian CP decomposition) model as a Bayesian network and a directed factor graph:


[Example 2]

This example is from the following paper:

Xinyu Chen, Zhaocheng He, Lijun Sun (2019). A Bayesian tensor decomposition approach for spatiotemporal traffic data imputation. Transportation Research Part C: Emerging Technologies, 98: 73-84.

drawing which shows the Bayesian network of Bayesian Gaussian CP factorization (BGCP) model. To draw this Bayesian network example, there are some preliminaries to follow:
  • preamble codes:
    1. define the documentclass as standalone, e.g., \documentclass[border = 0.1cm]{standalone} with 0.1cm border,
    2. use the package tikz, i.e., \usepackage{tikz}, and use tikz library like \usetikzlibrary{bayesnet} which is an important tool for drawing Bayesian networks and directed factor graph,
    3. set the tikz style by using the \tikzstyle{} command,
    4. use math equation environments including \usepackage{amsmath, amsfonts, amssymb}.
  • body codes:
    1. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    2. use \node to define nodes and text boxes in the Bayesian network,
    3. use \path to define arrows in the Bayesian network,
    4. use \plate to define plates in the Bayesian network.

Please click on the image and check out the source code. If you are interested in the original Bayesian network of BGCP in the paper, please check out BGCP.tex.


[Example 3]

This example is from the following paper:

Xinyu Chen, Zhaocheng He, Yixian Chen, Yuhuan Lu, Jiawei Wang (2019). Missing traffic data imputation and pattern discovery with a Bayesian augmented tensor factorization model. Transportation Research Part C: Emerging Technologies, 104: 66-77.

drawing which shows the Bayesian network of Bayesian augmented tensor factorization (BATF) model. To draw this Bayesian network example, there are some preliminaries to follow:
  • preamble codes:
    1. define the documentclass as standalone, e.g., \documentclass[border = 0.1cm]{standalone} with 0.1cm border,
    2. use the package tikz, i.e., \usepackage{tikz}, and use tikz library like \usetikzlibrary{bayesnet} which is an important tool for drawing Bayesian networks and directed factor graph,
    3. set the tikz style by using the \tikzstyle{} command,
    4. use math equation environments including \usepackage{amsmath, amsfonts, amssymb}.
  • body codes:
    1. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    2. use \node to define nodes and text boxes in the Bayesian network,
    3. use \path to define arrows in the Bayesian network,
    4. use \plate to define plates in the Bayesian network.

Please click on the image and check out the source code.


[Example 4]

This example is from the following paper:

Xinyu Chen, Lijun Sun (2021). Bayesian temporal factorization for multidimensional time series prediction. IEEE Transactions on Pattern Analysis and Machine Intelligence, 44 (9): 4659-4673.

drawing which shows the Bayesian network of Bayesian temporal matrix factorization (BTMF) model. To draw this Bayesian network example, there are some preliminaries to follow:
  • preamble codes:
    1. define the documentclass as standalone, e.g., \documentclass[border = 0.1cm]{standalone} with 0.1cm border,
    2. use the package tikz, i.e., \usepackage{tikz}, and use tikz library like \usetikzlibrary{bayesnet} which is an important tool for drawing Bayesian networks and directed factor graph,
    3. set the tikz style by using the \tikzstyle{} command,
    4. use math equation environments including \usepackage{amsmath, amsfonts, amssymb}.
  • body codes:
    1. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    2. use \node to define nodes and text boxes in the Bayesian network,
    3. use \path to define arrows in the Bayesian network,
    4. use \plate to define plates in the Bayesian network.

Please click on the image and check out the source code. Instead of multivariate vector autoregressive process on temporal factors, we can also use univariate autoregressive process to rebuild BTMF. The Beyasian network is available at btmf_net.png, you can also check out the source code btmf_net.tex.


Graphical Models

[Example 5]

drawing


drawing

These two examples show the partially observed time series matrix and tensor, respectively. To draw both two examples, we can follow these steps:

  • preamble codes:

    1. define the documentclass as standalone,
    2. use the package tikz.
  • body codes:

    1. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    2. use \node to define nodes and text boxes in the graphical model,
    3. use \path to define arrows in the graphical model.

[Example 6]

drawing


drawing

These two examples show the time series prediction in the presence of missing values. To draw both two examples, we can follow these steps:

  • preamble codes:

    1. define the documentclass as standalone,
    2. use the package tikz.
  • body codes:

    1. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    2. use \node to define nodes and text boxes in the graphical model,
    3. use \path to define arrows in the graphical model.

[Example 7]

drawing drawing

These two examples show the undirected and circulant graphs on the relational data samples with certain degrees. To draw both two examples, we can follow these steps:

  • preamble codes:

    1. define the documentclass as standalone,
    2. use the package tikz.
  • body codes:

    1. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    2. use \node to define nodes,
    3. use \path to define arrows.

[Example 8]

drawing

This example is from the following paper:

Xinyu Chen, Zhanhong Cheng, Nicolas Saunier, Lijun Sun (2022). Laplacian convolutional representation for traffic time series imputation. arXiv preprint arXiv: 2212.01529.

which gives a graphical illustration of the Laplacian convolutional model for time series imputation. To draw the example, we can follow these steps:

  • preamble codes:
    1. define the documentclass as standalone,
    2. use the package tikz.
  • body codes:
    1. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    2. use \begin{axis} \end{axis} and \addplot to draw coordinates,
    3. use \node and \path to draw nodes and arrows.

pgfplots Function Plotting

[Example 9]

drawing drawing

These two examples show the probability density function (PDF) and cumulative density function (CDF) of Erlang distribution, respectively. To draw the example, there are few steps to follow:

  • preamble codes:
    1. define the documentclass as standalone,
    2. use the package pgfplots,
    3. set font style and adjust \pgfplotsset{} as you prefer.
  • body codes:
    1. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    2. use \begin{axis} \end{axis} to draw the function,
    3. use \addplot to define the function for drawing.

[Example 10]
drawing

This example shows the PDF of normal distribution with different means and variances. To draw this example, there are few step to follow:


[Example 11]

drawing drawing

These two examples show the PDF and joint PDF of Lognormal distributions, respectively. There are some recommended material to follow the examples:


[Example 12]

drawing drawing

These two examples show the iterative process of conjugate gradient for solving a system of linear equations.


[Example 13]

drawing drawing

These two examples show the random and non-random missing patterns. To draw both two examples, we can follow these steps:

  • preamble codes:
    1. define the documentclass as standalone,
    2. use both tikz and pgfplots packages,
    3. use \begin{filecontents} \end{filecontents} to contain the data.
  • body codes:
    1. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    2. use \begin{axis} \end{axis} to draw the function,
    3. use \addplot to draw the data.

[Example 14]

drawing

This example shows four sequences consisting of Sine and Cosine functions. When regarding these sequences as time series, then we can see two kinds of temporal dynamics, that is, one is from Sine function, while another is from Cosine function. To draw this example, we can follow these steps:

  • preamble codes:
    1. define the documentclass as standalone,
    2. use the package pgfplots,
    3. set font style and adjust \pgfplotsset{} as you prefer.
  • body codes:
    1. use \pgfmathdeclarefunction to define the PDF function of normal (Gaussian) distribution,
    2. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    3. use \begin{axis} \end{axis} to draw the function,
    4. use \addplot to define the function for drawing.

[Example 15]

This example illustrates the mechanism of time series forecasting on streaming data in our tracebase project. To draw this example, we can follow these steps:

drawing
  • preamble codes:
    1. define the documentclass as standalone,
    2. use both tikz and pgfplots packages,
    3. set font style and adjust \pgfplotsset{} as you prefer.
  • body codes:
    1. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    2. use \begin{axis} \end{axis} to define the graphic,
    3. use addplot to define the marks at some coordinates and specify the color of these marks.

tikz for Matrix Structure

[Example 16]
drawing

This example gives a graphical illustration of the multivariate time series forecasting problem with missing values. To draw this example, we can follow these steps:

  • preamble codes:
    1. define the documentclass as standalone,
    2. use the package tikz.
  • body codes:
    1. set \Depth, \Width, and \Height parameters by using \newcommand,
    2. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    3. use \draw, \filldraw, and \node commands to define rectangles and nodes.

[Example 17]

drawing

This example gives a graphical illustration of the temporal matrix factorization. To draw this example, we can follow these steps:

  • preamble codes:
    1. define the documentclass as standalone,
    2. use the package tikz.
  • body codes:
    1. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    2. use \draw and \filldraw to set nodes and rectangles.

[Example 18]
drawing

This example gives a graphical illustration of the rolling time series forecasting with temporal matrix factorization. To draw this example, we can follow these steps:

  • preamble codes:
    1. define the documentclass as standalone,
    2. use the package tikz.
  • body codes:
    1. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    2. use \draw and \filldraw to set nodes and rectangles.

tikz-3dplot for Tensor Structure

[Example 19]

This example gives a graphical illustration of a third-order tensor. To draw this example, we can follow these steps:

drawing
  • preamble codes:
    1. define the documentclass as standalone,
    2. use both tikz and tikz-3dplot packages.
  • body codes:
    1. set \Depth, \Width, and \Height parameters by using \newcommand,
    2. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    3. define the coordinates of the tensor edges,
    4. use \draw command to define nodes.

[Example 20]

This example gives a graphical illustration of classical CP tensor factorization on a third-order tensor. To draw this example, we can follow these steps:

drawing
  • preamble codes:
    1. define the documentclass as standalone,
    2. use both tikz and tikz-3dplot packages.
  • body codes:
    1. set \Depth, \Width, and \Height parameters by using \newcommand,
    2. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    3. define the coordinates of the tensor edges,
    4. use \draw command to define nodes.

[Example 21]

drawing

This example gives a graphical illustration of augmented tensor factorization model. To draw this example, we can follow these steps:

  • preamble codes:
    1. define the documentclass as standalone,
    2. use both tikz and tikz-3dplot packages.
  • body codes:
    1. set \Depth, \Width, and \Height parameters by using \newcommand,
    2. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    3. define the coordinates of the tensor edges,
    4. use \draw command to define nodes.

[Example 22]

drawing

This example gives a graphical illustration of tensor completion task and its framework including data organization and tensor completion, in which traffic measurements are partially observed. To draw this example, we can follow these steps:

  • Request:
    1. upload curve1.pdf,
    2. upload curve2.pdf.
  • preamble codes:
    1. define the documentclass as standalone,
    2. use both tikz and tikz-3dplot packages.
  • body codes:
    1. set \Depth, \Width, and \Height parameters by using \newcommand,
    2. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    3. define the coordinates of the tensor edges,
    4. use \draw command to define nodes.

[Example 23]

drawing

This example gives a graphical illustration of low-rank autoregressive tensor completion model. To draw this example, we can follow these steps:

  • preamble codes:
    1. define the documentclass as standalone,
    2. use both tikz and tikz-3dplot packages.
  • body codes:
    1. set \Depth, \Width, and \Height parameters by using \newcommand,
    2. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    3. use \node, \path, \plate commands to define nodes, arrows, and plates,
    4. define the coordinates of the tensor edges,
    5. use \draw command to define nodes.

[Example 24]

This example gives a graphical illustration of singular value thresholding process of the tensor data with unitary transform. To draw this example, we can follow these steps:

drawing

  • preamble codes:
    1. define the documentclass as standalone,
    2. use both tikz and tikz-3dplot packages.
  • body codes:
    1. set \Depth, \Width, and \Height parameters by using \newcommand,
    2. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    3. use \node command to define nodes,
    4. define the coordinates of the tensor edges,
    5. use \draw command to define nodes,
    6. use \filldraw command to define colors of rectangles.

[Example 25]

drawing

This example gives a graphical illustration of low-rank tensor completion model. To draw this example, we can follow these steps:

  • Request:
    1. upload input_tensor.pdf,
    2. upload output_tensor.pdf.
  • preamble codes:
    1. define the documentclass as standalone,
    2. use both tikz and tikz-3dplot packages,
    3. use the algorithm2e package,
    4. use \usetikzlibrary{positioning, matrix, fit, calc}.
  • body codes:
    1. use \begin{algorithm} \end{algorithm} environment to define algorithm,
    2. use \matrix command to position the components,
    3. use \begin{scope} \end{scope} to contain the layers.

[Example 26]

drawing

This example gives a graphical illustration of low-rank tensor regression model. To draw this example, we can follow these steps:

  • preamble codes:
    1. define the documentclass as standalone,
    2. use both tikz and tikz-3dplot packages.
  • body codes:
    1. set \Depth, \Width, and \Height parameters by using \newcommand,
    2. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    3. use \draw command to define nodes.

Data Visualization

[Example 27]

drawing

This example shows the imputation accuracy of some matrix and tensor models. To draw this example, we can follow these steps:

  • preamble codes:
    1. define the documentclass as standalone,
    2. use the package tikz.
  • body codes:
    1. use \begin{tikzpicture} \end{tikzpicture} to start drawing,
    2. use \draw command to define nodes,
    3. use \pgfuseimage command to import images.

Related Projects


Publications

Most of these examples are from our papers:

  • Xinyu Chen, Zhanhong Cheng, Nicolas Saunier, Lijun Sun (2022). Laplacian convolutional representation for traffic time series imputation. arXiv preprint arXiv: 2212.01529. [Preprint] [Python code (univariate imputation)] [Python code (multivariate imputation)]

  • Xinyu Chen, Lijun Sun (2022). Bayesian temporal factorization for multidimensional time series prediction. IEEE Transactions on Pattern Analysis and Machine Intelligence, 44 (9): 4659-4673. [Preprint] [DOI] [Slides] [Data & Python code]

  • Xinyu Chen, Mengying Lei, Nicolas Saunier, Lijun Sun (2022). Low-rank autoregressive tensor completion for spatiotemporal traffic data imputation. IEEE Transactions on Intelligent Transportation Systems, 23 (8): 12301-12310. [Preprint] [DOI] [Data & Python code] (Also accepted in part to MiLeTS Workshop of KDD 2021, see workshop paper)

  • Xinyu Chen, Yixian Chen, Nicolas Saunier, Lijun Sun (2021). Scalable low-rank tensor learning for spatiotemporal traffic data imputation. Transportation Research Part C: Emerging Technologies, 129: 103226. [Preprint] [DOI] [Data] [Python code]

  • Xinyu Chen, Lijun Sun (2020). Low-rank autoregressive tensor completion for multivariate time series forecasting. arXiv preprint arXiv: 2006.10436. [Preprint] [Data & Python code]

  • Xinyu Chen, Jinming Yang, Lijun Sun (2020). A nonconvex low-rank tensor completion model for spatiotemporal traffic data imputation. Transportation Research Part C: Emerging Technologies, 117: 102673. [Preprint] [DOI] [Data & Python code]

  • Xinyu Chen, Zhaocheng He, Yixian Chen, Yuhuan Lu, Jiawei Wang (2019). Missing traffic data imputation and pattern discovery with a Bayesian augmented tensor factorization model. Transportation Research Part C: Emerging Technologies, 104: 66-77. [DOI] [Slides] [Data] [Matlab code] [Python code]

  • Xinyu Chen, Zhaocheng He, Lijun Sun (2019). A Bayesian tensor decomposition approach for spatiotemporal traffic data imputation. Transportation Research Part C: Emerging Technologies, 98: 73-84. [Preprint] [DOI] [Data] [Matlab code] [Python code]

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