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cowplot
cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2ggtext
Improved text rendering support for ggplot2ggridges
Ridgeline plots in ggplot2SDS375
SDS 375 Data Visualization in Rungeviz
Tools for visualizing uncertainty with ggplot2gridtext
Improved text rendering support for grid graphics in Rpracticalgg
Practical ggplot2Opfi
A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.DSC385
ProteinEvolutionToolbox
Metagenomics_CAST
Metagenomic search for novel CRISPR-transposonssicegar
R package for the analysis of single cell virology growth curvesinfluenza_HA_evolution
wilkelab.github.io.archive_sep_2020
Source for wilkelab.org websitecinful
A fully automated pipeline to identify microcins along with their associated immunity proteins and export machinerydataviz_shortcourse
Materials for a dataviz shortcourseEBOV_H1N1
r4s_benchmark
cinful_data_analysis
A repository for the analysis involved in "Evidence for widespread class II microcins in Enterobacterales genomes"influenza_H3N2_passaging
Data and code for McWhite et al., Sequence amplification via cell passaging creates spurious signals of positive adaptation in influenza virus H3N2 hemagglutinin, Virus Evolution (2016)wilkelab.github.io
complex_divergence_simul
Code and data for PPI simulation part of Kachroo et al., Systematic humanization of yeast genes reveals conserved functions and genetic modularity. Science 348:921–925, 2015eGFP_deletion_prediction
rate_variability_variation
Code and data for Jackson et al., Intermediate divergence levels maximize the strength of structure–sequence correlations in enzymes and viral proteins, Protein Science, in press.MACV_TfR1_modeling
influenza_codon_usage
Data and code for Smith et al., Avian Influenza Virus PB1 Gene in H3N2 Viruses Evolved in Humans To Reduce Interferon Inhibition by Skewing Codon Usage toward Interferon-Altered tRNA Pools, mBio 2018therm_constraints_rate_variation
Code and data for Echave et al., Relationship between protein thermodynamic constraints and variation of evolutionary rates among sites, Phys. Biol. 12:025002, 2015.Love Open Source and this site? Check out how you can help us