Explore @wilkelab Open Source projects

Wilke Lab (@wilkelab)

wilkelab

Stars
2,504
Global Org. Rank 8,078 (Top 3 %)
Registered over 10 years ago
Most used languages

R
35.7 %

Python
17.9 %

HTML
17.9 %

HyPhy 7.1 %

Brainfuck 3.6 %

TeX
3.6 %

C++
3.6 %

Shell
3.6 %

Jupyter Notebook
3.6 %

Pep8 3.6 %

cowplot

cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2

ggtext

Improved text rendering support for ggplot2

ggridges

Ridgeline plots in ggplot2

SDS375

SDS 375 Data Visualization in R

ungeviz

Tools for visualizing uncertainty with ggplot2

gridtext

Improved text rendering support for grid graphics in R

practicalgg

Practical ggplot2

Opfi

A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.

DSC385

ProteinEvolutionToolbox

Metagenomics_CAST

Metagenomic search for novel CRISPR-transposons

sicegar

R package for the analysis of single cell virology growth curves

influenza_HA_evolution

wilkelab.github.io.archive_sep_2020

Source for wilkelab.org website

cinful

A fully automated pipeline to identify microcins along with their associated immunity proteins and export machinery

influenza_pH1N1_timecourse

dataviz_shortcourse

Materials for a dataviz shortcourse

EBOV_H1N1

r4s_benchmark

cinful_data_analysis

A repository for the analysis involved in "Evidence for widespread class II microcins in Enterobacterales genomes"

Jupyter Notebook

influenza_H3N2_passaging

Data and code for McWhite et al., Sequence amplification via cell passaging creates spurious signals of positive adaptation in influenza virus H3N2 hemagglutinin, Virus Evolution (2016)

wilkelab.github.io

complex_divergence_simul

Code and data for PPI simulation part of Kachroo et al., Systematic humanization of yeast genes reveals conserved functions and genetic modularity. Science 348:921–925, 2015

eGFP_deletion_prediction

rate_variability_variation

Code and data for Jackson et al., Intermediate divergence levels maximize the strength of structure–sequence correlations in enzymes and viral proteins, Protein Science, in press.

MACV_TfR1_modeling

influenza_codon_usage

Data and code for Smith et al., Avian Influenza Virus PB1 Gene in H3N2 Viruses Evolved in Humans To Reduce Interferon Inhibition by Skewing Codon Usage toward Interferon-Altered tRNA Pools, mBio 2018

therm_constraints_rate_variation

Code and data for Echave et al., Relationship between protein thermodynamic constraints and variation of evolutionary rates among sites, Phys. Biol. 12:025002, 2015.