• Stars
    star
    2
  • Language
    R
  • Created almost 10 years ago
  • Updated almost 9 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Code and data for PPI simulation part of Kachroo et al., Systematic humanization of yeast genes reveals conserved functions and genetic modularity. Science 348:921–925, 2015

More Repositories

1

cowplot

cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2
R
678
star
2

ggtext

Improved text rendering support for ggplot2
R
643
star
3

ggridges

Ridgeline plots in ggplot2
R
404
star
4

SDS375

SDS 375 Data Visualization in R
HTML
282
star
5

ungeviz

Tools for visualizing uncertainty with ggplot2
R
158
star
6

gridtext

Improved text rendering support for grid graphics in R
R
95
star
7

practicalgg

Practical ggplot2
R
73
star
8

Opfi

A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
Python
21
star
9

ProteinEvolutionToolbox

Python
14
star
10

DSC385

HTML
14
star
11

Metagenomics_CAST

Metagenomic search for novel CRISPR-transposons
C++
10
star
12

influenza_HA_evolution

Brainfuck
8
star
13

sicegar

R package for the analysis of single cell virology growth curves
R
8
star
14

wilkelab.github.io.archive_sep_2020

Source for wilkelab.org website
HTML
7
star
15

cinful

A fully automated pipeline to identify microcins along with their associated immunity proteins and export machinery
Pep8
6
star
16

influenza_pH1N1_timecourse

HyPhy
5
star
17

dataviz_shortcourse

Materials for a dataviz shortcourse
HTML
4
star
18

r4s_benchmark

Shell
3
star
19

EBOV_H1N1

TeX
3
star
20

cinful_data_analysis

A repository for the analysis involved in "Evidence for widespread class II microcins in Enterobacterales genomes"
Jupyter Notebook
3
star
21

wilkelab.github.io

HTML
2
star
22

influenza_H3N2_passaging

Data and code for McWhite et al., Sequence amplification via cell passaging creates spurious signals of positive adaptation in influenza virus H3N2 hemagglutinin, Virus Evolution (2016)
HyPhy
2
star
23

eGFP_deletion_prediction

R
1
star
24

rate_variability_variation

Code and data for Jackson et al., Intermediate divergence levels maximize the strength of structure–sequence correlations in enzymes and viral proteins, Protein Science, in press.
Python
1
star
25

MACV_TfR1_modeling

R
1
star
26

influenza_codon_usage

Data and code for Smith et al., Avian Influenza Virus PB1 Gene in H3N2 Viruses Evolved in Humans To Reduce Interferon Inhibition by Skewing Codon Usage toward Interferon-Altered tRNA Pools, mBio 2018
Python
1
star
27

therm_constraints_rate_variation

Code and data for Echave et al., Relationship between protein thermodynamic constraints and variation of evolutionary rates among sites, Phys. Biol. 12:025002, 2015.
Python
1
star