Discover weecology/data-sharing-paper Open Source project

Quickly download, clean up, and install public datasets into a database management system

512

retriever

Benchmark dataset for tree detection for airborne RGB, Hyperspectral and LIDAR imagery

307

NeonTreeEvaluation

ogrants

DeepTreeAttention

Implementation of Hang et al. 2020 "Hyperspectral Image Classification with Attention Aided CNNs" for tree species prediction

LIDAR and RGB Deep Learning Model for Individual Tree Segmentation

118

DeepLidar

Official Repo of the Portal Project Data

PortalData

LDATS

Latent Dirichlet Allocation coupled with Bayesian Time Series analyses

NeonTreeEvaluation_package

R package for evaluating individual tree crown predictions against a diverse benchmark dataset

forecasting-course

Morgan Ernest & Ethan White's Ecological Forecasting & Dynamics Course

Pytorch implementation of the deepforest model for tree crown RGB detection.

DeepForest-pytorch

JavaScript

livedat

Template for living data workflow

portal-teachingdb

A simplified version of the Portal Project database designed for teaching

R Package for Macroecological Analysis of Time Series Structure (MATSS)

MATSS

white-etal-2012-ecology

Code for replicating "Characterizing species-abundance distributions across taxa and ecosystems using a simple maximum entropy model" by Ethan P. White, Katherine M. Thibault, and Xiao Xiao

A collection of functions to summarize the Portal Data

portalr

BirdDetector

A global bird detector model for the DeepForest-pytorch package

Software for fitting and testing John Harte and colleagues' Maximum Entropy Theory of Ecology.

METE

Tools for Macroecological Analyses Using Python

deepforestr

TeX

macroecotools

The Pydata Weaver: A data Integration platform

pydataweaver

Using various models to forecast abundances at Portal

portalPredictions

portalcasting

Model development, deployment, and evaluation for forecasting Portal ecosystem dynamics

TreeSegmentation

Reproducible analysis of tree segmentation methods in R.

Elita Baldridge's dissertation repository

sad-comparison

Morgan Ernest and Ethan White's course on Ecological Dynamics and Forecasting

forecasting-dynamics-course

The MillionTreesBenchmark

MillionTrees

zero-inflated negative binomial neural network with variational approximation to site-level & observer-level random effects

abundance

bibliometrics

Bibliometric research

Research on forecasting using Breeding Bird Survey data

bbs-forecasting

Dashboard for retriever dataset status

retrieverdash

Forecasting Analysis Comparison for Ecological Time Series

MATSS-forecasting

Retriever.jl

Julia wrapper for the Data Retriever software

Julia

mete-spatial

Research on the spatial predictions of METE

retriever-recipes

Macroecological LDA analysis of time series

website

Lab website

TeX

livedat-github-actions

experimental-rads

MATSS-LDATS

NeonTreeEvaluation_python

python benchmark for individual tree crown methods

DEPRECATED DeepForest demos

DeepForest_demos

R package version of Portal Project Teaching Database

ratdat

branch-arch

neonwranglerpy

Data from the Everglades breeding bird monitoring project

EvergladesWadingBird

ecology-data-cache

lab-manual

Shell

mvgamportal

DeepForest_Model

Companion repo to DeepForest for training large models from DeepForest python package.

Automated build of a MATSS compendium

MATSSdemo

Methods and tools for evaluating probabilistic forecasts

forecast_evaluation

feasiblesets

Research code for understanding distributions of wealth in the context of all possible distributions

DoubleCounting

A repo for visualizing airborne imagery, making a prediction with a deepforest model and remove double counting among overlapping images.

Research on making geographic predictions for macroecological patterns using the Maximum Entropy Theory of Ecology

mete-geog

mcdb

Mammal community database updates

diversity-conservation

Code for working with the Portal Project data

datawiki

PHP

portal-tools

Generating tree crown maps for NEON sites

NEON_crown_maps

Website for the EcoData Retriever

retriever-website

CSS

retriever-site

http://www.data-retriever.org

CSS

portal-exploration

Exploration of the Portal data, using portalr

EvergladesSpeciesModel

A deepforest model for wading bird species prediction.

Joint RGB and Deep Learning for individual tree detection

DeepTreeScape

Makefile

mete-energy

Research on the energetic predictions of METE

lessons taught at the ESA workshop 2022 titled

ESA_workshop_2022

This is the companion repo that presents analysis for methods tested on the NeonTreeEvaluation benchmark repo

NeonTreeEvaluation_analysis

A tree species classification benchmark for the National Ecological Observatory Network

NeonSpeciesBenchmark

sifting and comparing multiple NDVI sources and ensembles

NDVIning

forecasts

Archived forecasts for future analysis

portal-explorer

Shiny App for exploratory data analysis of the Portal Project

portal-experimental-macroeco

Code for reproducing the results from "An experimental test of the response of macroecological patterns to altered species interactions" by Sarah Supp et al. 2013 publishe in Ecology

bbc-data-rescue

Extracting data from Breeding Bird Census publications

Research on rodent dispersal patterns near Portal AZ

portal-rodent-dispersal

MATSS-startup

Macroecological Analysis of Time Series Structure

TreeDemo

Shiny app for tree detection in RGB imagery

A collection of functions to retrieve and summarize the EvergladesWadingBird Data

wader

AirborneBirds

The Airborne Birds benchmark

wiki

Weecology's Wiki - how to navigate life in the lab from choosing and pursuing a career path to using the printer