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cloud-automation
Automation for standing up Gen3 commonsfence
AuthN/AuthZ OIDC Servicedata-portal
Windmill: data portal for metadata submission and queryindexd
Index service servercompose-services
Deploy Gen3 using Docker composemetadata-service
The Metadata Service provides API for retrieving JSON metadata of GUIDs.peregrine
GraphQL search API servicegen3sdk-python
Gen3 SDK for Pythonarborist
Gen3 policy enginegen3.org
The website for gen3.orgmariner
The Gen3 Workflow Execution Servicesheepdog
API for herding data submissionspypfb
Python library & CLI to create, view and edit PFB filesgen3-fuse
an S3 file system built on jacobsa/fuse that uses the workspace-token-servicegen3-helm
Helm charts for Gen3 Deploymentscdis-data-client
data access clienthatchery
guppy
Server that supports GraphQL queries on data from Elasticsearchcdis-jenkins-lib
Little groovy helper for Jenkins pipelinesndh-demo
Jupyter notebook and shinyR apps for NIAID Data Hub demodcfdictionary
audit-service
cdis-manifest
Manifests tracking service versions to release to each environmentdata-simulator
gitops-dev
midrc_dictionary
A data dictionary for the Medical Imaging Resource Data Commons (MIDRC).dictionaryutils
python wrapper and metaschema for datadictionaryuserdatamodel
PDC data model for user managementgen3-qa
Integration Tests for Gen3indexclient
Prototype index service client.requestor
API to manage access requestsrelease-helper
Python CLI to generate release notes by scanning a repo's pull requests descriptionsacronym-bot
Expand CTDS acronymscirrus
Cloud Management Library (Wrapping Cloud APIs)create-gen3-app
Create Gen3 apps without configuration.sower
Job dispatcher for Kubernetescommons-frontend-app
Gen3 Data Commons template repository for gen3 frontend frameworkcovid19-tools
tube
ETLgen3_dictionary_tools
A collection of python functions for converting data dictionaries between YAML and TSV formats.gitops-qa
gen3-ui-component
Base UI component in gen3argo-wrapper
Wrapping Argo into nice API for VADC GWAS appndhdictionary
Data dictionary for NIAID Commons projectgen3-userservices-info
Information gathered by the Gen3 User Service Team for Documentationgtex-dictionary
Data dictionary to collect GTEx datasetworkspace-token-service
pelican
Sower jobs for PFB export & importssjdispatcher
SQS S3 Job Dispatcherpidgin
key value metadata servicecovid19_datadictionary
dbgap-extract
Extract sample data from NCBI's dbGaP sitegen3-frontend-framework
A Frontend Framework for Gen3 data portalsdrsclient
This is the client library for making requests to the GA4GH DRS compatible services and returning an Indexd compatible document.tcga_dictionary
A light-weight Gen3 data dictionary for representing TCGA/PCAWG/ICGC studies.genomel_pipelines
GenoMEL pipelines in Bionimbuscdis-python-utils
utilities to ease python code developmentIBDGC_demos
Demonstrations for the IBDGC Commonsgen3-user-doc
gen3authz
sc19-pfb-artifacts
Artifacts for SC19 paper about PFBgenomel-dictionary
Data dictionary for GenoMEL projectMicrobiome_datadictionary
New NDE Microbiome data dictionarytopmed-cwl
This is cwl pipeline for alignment potentially used for TopMed data analysisgen3-release-utils
Gen3 release process automation toolsdcp-demo
Jupyter notebook for GTEx and TOPMed projects at Data Commons Pilot (DCP) projectgen3-terraform
vadictionary
Data dictionary for VA Precision Oncology projectcwl.go
forked from https://github.com/otiai10/cwl.go/flask-postgres-session
server side user session for flask app with postgres as backendcdislogging
JCOIN_datadictionary
JCOIN Data Dictionarybc-jupyterNotebook
gen3-spark
bc-cwl
gen3utils
Utils for Gen3 commons managementLove Open Source and this site? Check out how you can help us