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cloud-automation
Automation for standing up Gen3 commonsfence
AuthN/AuthZ OIDC Servicedata-portal
Windmill: data portal for metadata submission and queryindexd
Index service servercompose-services
Deploy Gen3 using Docker composemetadata-service
The Metadata Service provides API for retrieving JSON metadata of GUIDs.peregrine
GraphQL search API servicegen3sdk-python
Gen3 SDK for Pythonarborist
Gen3 policy enginegen3.org
The website for gen3.orgmariner
The Gen3 Workflow Execution Servicesheepdog
API for herding data submissionsgen3-helm
Helm charts for Gen3 Deploymentspypfb
Python library & CLI to create, view and edit PFB filesgen3-fuse
an S3 file system built on jacobsa/fuse that uses the workspace-token-servicecdis-data-client
data access clienthatchery
cdis-jenkins-lib
Little groovy helper for Jenkins pipelinesndh-demo
Jupyter notebook and shinyR apps for NIAID Data Hub demodcfdictionary
audit-service
cdis-manifest
Manifests tracking service versions to release to each environmentdata-simulator
gitops-dev
midrc_dictionary
A data dictionary for the Medical Imaging Resource Data Commons (MIDRC).dictionaryutils
python wrapper and metaschema for datadictionaryuserdatamodel
PDC data model for user managementgen3-qa
Integration Tests for Gen3indexclient
Prototype index service client.requestor
API to manage access requestsrelease-helper
Python CLI to generate release notes by scanning a repo's pull requests descriptionsplanx-bioinfo-tools
Collection of helpful scripts for mapping, ETL, automation and others related to PlanX bioinformatics team. It includes tools for data model and data dictionary creation as well as data submission.acronym-bot
Expand CTDS acronymscirrus
Cloud Management Library (Wrapping Cloud APIs)create-gen3-app
Create Gen3 apps without configuration.sower
Job dispatcher for Kubernetescommons-frontend-app
Gen3 Data Commons template repository for gen3 frontend frameworkcovid19-tools
tube
ETLgen3_dictionary_tools
A collection of python functions for converting data dictionaries between YAML and TSV formats.gitops-qa
gen3-ui-component
Base UI component in gen3argo-wrapper
Wrapping Argo into nice API for VADC GWAS appndhdictionary
Data dictionary for NIAID Commons projectgen3-userservices-info
Information gathered by the Gen3 User Service Team for Documentationgtex-dictionary
Data dictionary to collect GTEx datasetworkspace-token-service
pelican
Sower jobs for PFB export & importssjdispatcher
SQS S3 Job Dispatcherpidgin
key value metadata servicecovid19_datadictionary
dbgap-extract
Extract sample data from NCBI's dbGaP sitegen3-frontend-framework
A Frontend Framework for Gen3 data portalsgen3utils
Utils for Gen3 commons managementdrsclient
This is the client library for making requests to the GA4GH DRS compatible services and returning an Indexd compatible document.tcga_dictionary
A light-weight Gen3 data dictionary for representing TCGA/PCAWG/ICGC studies.genomel_pipelines
GenoMEL pipelines in Bionimbusgen3-release-utils
Gen3 release process automation toolsIBDGC_demos
Demonstrations for the IBDGC Commonsgen3-user-doc
cdis-python-utils
utilities to ease python code developmentgen3authz
sc19-pfb-artifacts
Artifacts for SC19 paper about PFBgenomel-dictionary
Data dictionary for GenoMEL projectMicrobiome_datadictionary
New NDE Microbiome data dictionarytopmed-cwl
This is cwl pipeline for alignment potentially used for TopMed data analysisdcp-demo
Jupyter notebook for GTEx and TOPMed projects at Data Commons Pilot (DCP) projectgen3-terraform
vadictionary
Data dictionary for VA Precision Oncology projectcwl.go
forked from https://github.com/otiai10/cwl.go/cdislogging
JCOIN_datadictionary
JCOIN Data Dictionarybc-jupyterNotebook
gen3-spark
bc-cwl
flask-postgres-session
server side user session for flask app with postgres as backendLove Open Source and this site? Check out how you can help us