There are no reviews yet. Be the first to send feedback to the community and the maintainers!
scanpy
Single-cell analysis in Python. Scales to >1M cells.scvi-tools
Deep probabilistic analysis of single-cell omics dataanndata
Annotated data.squidpy
Spatial Single Cell Analysis in Pythonspatialdata
An open and interoperable data framework for spatial omics datamuon
muon is a multimodal omics Python frameworkscirpy
A scanpy extension to analyse single-cell TCR and BCR data.scanpy-tutorials
Scanpy Tutorials.pertpy
Perturbation Analysis in the scverse ecosystem.scanpy_usage
Scanpy use cases.mudata
Multimodal Data (.h5mu) implementation for Pythoncookiecutter-scverse
Cookiecutter template for scverseanndataR
AnnData interoperability in Rpytometry
Flow & mass cytometry analytics.napari-spatialdata
Interactive visualization of spatial omics datascvi-tutorials
Notebooks used in scvi-tools tutorialsspatialdata-notebooks
spatialdata-io
spatialdata-plot
Static plotting for spatialdatasquidpy_notebooks
Tutorials for SquidpyMuon.jl
Muon for Juliascvi-tools-skeleton
Template repository for creating novel models with scvi-toolsecosystem-packages
Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)genomic-features
Genomic Features in Python from BioConductor's AnnotationHubanndata-tutorials
Use cases for anndata.muon-tutorials
Tutorials for multimodal omics data analysisscverse-tutorials
Tutorials for learning scversegovernance
Governance docs for scversepertpy-tutorials
simple-scvi
Example repo of using scvi-tools building blocks externally with simplified scVI implementationmulti-condition-comparisions
Functions for analyzing and visualizing multi-condition single-cell data (prototypes created at Cambridge hackathon)shadows
Shadow objects for AnnData and MuData (experimental)benchmark
Code for running benchmarksscverse.github.io
scverse.org websiteLove Open Source and this site? Check out how you can help us