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awesome-fbp
Awesome Flow-Based Programming (FBP) Resourcesawesome-scientific-go
Go libraries for scientific computingdevbox-golang
A Vagrant box with Ansible provisioning for setting up a vim-based Go(lang) development environmentmdnote
I couldn't find a suitable simple Markdown Notebook, so I "created an own"awesome-ada
Awesome resources and other links related to the Ada programming languageawesome-datalog
Awesome datalog libraries, tools and resourcesgccontent-benchmark
Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)k8s-experiments
Experimentation with the Go client of kubernetes, in order to learn itblow
Flow-based Bioinformatics library written in Goglow
PROJECT DEPRECATED! Instead see http://flowbase.org and http://scipipe.org for libraries built on this patternscicommander
Run shell commands in a scientifically reproducible and robust waydevbox-python
A Vagrant/Docker/Virtualbox/Ansible powered vim-based development environment for python.awesome-pascal
Awesome stuff related to the Pascal (Mainly Object Pascal) programming languageluigis_monkey_wrench
*** DEPRECATED!!! *** The functionality of library is planned to move into SciLuigi, together with even more great functionality.rc
Some of my rc files, like .vimrc etc, so I can easily set it up on new machines/accounts.zymake-mirror
Mirror of the zymake tool. (See http://www-personal.umich.edu/~ebreck/code/zymake )bioclipse.swipl
Integration of SWI-Prolog into Bioclipseey
Radically simple reproducible task execution via shell or python functionsuirods
splot
Simple Sequence Plotterffind
Fuzzy find / search for files in subfolders, on the command linegeany-colorscheme
My favourite geany color schemebioclipse.blipkit
Integration of BLIPKITirods-cheatsheets
Cheat sheets for working wirh the iRODS data system (Work in progress)sq
Scientific Query system. Pronounced as "esque", or just "ask"galaxy-toolconfig-parser
bioclipse.docpublish
Eclipse Plug-In with Ant Tasks for publishing developer documentation as Eclipse help files as well as to MediaWikicombine
A small Go program to create combinations of all values (strings) in a set of arraysbioclipse.igv
Integration of the Integrative Genomics Viewer (IGV) in Bioclipsemw2html
mw2htmlgo-install
A simple installation script of Golang on linux amd64 systemsvirtualbox-cluster
A (currently only 3 node) virtualbox cluster for quickly testing out thingsGeneIdConvert
MediaWiki extension to convert from Ensembl IDs to other ID types, via Ensembl REST API.CyanicPastels
A simple, to-the-point dark color theme for Visual Studio Code, with a soothing CMYK-like color scalebioclipse.smw
Semantic MediaWiki connector for Bioclipsedevbox-base
A Vagrant box (Virtualbox or Docker as providers and Ansible provisioning) base image, to use as template for setting up specialized development environments.evoluspencil
Automatically exported from code.google.com/p/evoluspencilgalaxy-toolconfig-bnf
EBNF Grammar for generating an ANTLR parser for the Galaxy ToolConfig CLI Tool wrapper formatirods-rulelang-cheatsheet
A HTML cheat sheet for the iRODS rule languagephpsnippets.fastaformatter
A little PHP script to format FASTA Protein sequences nicelygoprofileify
A script that automates the profiling of Go programs using Dave Cheney's profile packagelearn-elixir
Various scripts written as I learn Elixiridepub2html
A converter from InDesign Epub files to clean and simple HTML, for extraction to e.g. CMSes.fastxviz
Small utility to print distribution of sequence/read lengths in fastq filesgetter-and-setter-generator
Getter and Setter generator - Generates corresponding methods based on existing variable names. Variable name to be autogeneratoedmust follow the naming convention "$mVariableName" where "$m" tells the generator which variable to have a get or set-method.arc_tools
Convenience tools for working with the arc SRM client (commands such as ngls, or arcls etc)Love Open Source and this site? Check out how you can help us