Discover samuell/bioclipse.docpublish Open Source project

I couldn't find a suitable simple Markdown Notebook, so I "created an own"

mdnote

Awesome resources and other links related to the Ada programming language

awesome-ada

awesome-datalog

Awesome datalog libraries, tools and resources

gccontent-benchmark

Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)

Rust

k8s-experiments

Experimentation with the Go client of kubernetes, in order to learn it

xara-xtreme

Xara Xtreme (formerly aka Xara LX) source code mirror

C++

blow

Flow-based Bioinformatics library written in Go

glow

PROJECT DEPRECATED! Instead see http://flowbase.org and http://scipipe.org for libraries built on this pattern

scicommander

Run shell commands in a scientifically reproducible and robust way

devbox-python

A Vagrant/Docker/Virtualbox/Ansible powered vim-based development environment for python.

Awesome stuff related to the Pascal (Mainly Object Pascal) programming language

awesome-pascal

luigis_monkey_wrench

*** DEPRECATED!!! *** The functionality of library is planned to move into SciLuigi, together with even more great functionality.

Some of my rc files, like .vimrc etc, so I can easily set it up on new machines/accounts.

Vim Script

zymake-mirror

Mirror of the zymake tool. (See http://www-personal.umich.edu/~ebreck/code/zymake )

OCaml

bioclipse.swipl

Integration of SWI-Prolog into Bioclipse

Radically simple reproducible task execution via shell or python functions

Fuzzy find / search for files in subfolders, on the command line

uirods

splot

Simple Sequence Plotter

ffind

My favourite geany color scheme

geany-colorscheme

bioclipse.blipkit

Integration of BLIPKIT

Cheat sheets for working wirh the iRODS data system (Work in progress)

irods-cheatsheets

Scientific Query system. Pronounced as "esque", or just "ask"

galaxy-toolconfig-parser

A small Go program to create combinations of all values (strings) in a set of arrays

combine

bioclipse.igv

Integration of the Integrative Genomics Viewer (IGV) in Bioclipse

mw2html

A simple installation script of Golang on linux amd64 systems

go-install

A (currently only 3 node) virtualbox cluster for quickly testing out things

virtualbox-cluster

GeneIdConvert

MediaWiki extension to convert from Ensembl IDs to other ID types, via Ensembl REST API.

PHP

CyanicPastels

A simple, to-the-point dark color theme for Visual Studio Code, with a soothing CMYK-like color scale

bioclipse.smw

Semantic MediaWiki connector for Bioclipse

A Vagrant box (Virtualbox or Docker as providers and Ansible provisioning) base image, to use as template for setting up specialized development environments.

devbox-base

Automatically exported from code.google.com/p/evoluspencil

evoluspencil

JavaScript

galaxy-toolconfig-bnf

EBNF Grammar for generating an ANTLR parser for the Galaxy ToolConfig CLI Tool wrapper format

A HTML cheat sheet for the iRODS rule language

irods-rulelang-cheatsheet

HTML

phpsnippets.fastaformatter

A little PHP script to format FASTA Protein sequences nicely

PHP

goprofileify

A script that automates the profiling of Go programs using Dave Cheney's profile package

Various scripts written as I learn Elixir

learn-elixir

Elixir

idepub2html

A converter from InDesign Epub files to clean and simple HTML, for extraction to e.g. CMSes.

fastxviz

Small utility to print distribution of sequence/read lengths in fastq files

getter-and-setter-generator

Getter and Setter generator - Generates corresponding methods based on existing variable names. Variable name to be autogeneratoedmust follow the naming convention "$mVariableName" where "$m" tells the generator which variable to have a get or set-method.

PHP

arc_tools

Convenience tools for working with the arc SRM client (commands such as ngls, or arcls etc)