pieper/Notebooks

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Jupyter Notebook
License
Apache License 2.0
Created over 4 years ago
Updated 8 months ago

pieper/Notebooks

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Repo for saving jupyter notebooks (e.g. from colab)

dicomsort

A project to provide custom sorting and renaming of dicom files

SlicerDockers

docker config files for slicer

SlicerWeb

Slicer modules that support web services and web applications

sites

a place for some demo code to be exposed as ghpages

SlicerParallelProcessing

Slicer modules for running subprocesses to operate on data in parallel

Slicer4

Note: this is just a test location - the real repository is at http://svn.slicer.org/Slicer4 - The next generation of 3D Slicer.

Chronicle

An ordered record of events and data

SlicerWGPU

Use wgpu, a rust-python WebGPU implementation, in 3D Slicer

step

STEP library for field processing with webgl/glsl

ModelDraw

Tool to build interploation structures for 3D anatomy editing

SlicerMachines

Bootable machine images with Slicer and friends preloaded

SlicerExtensions

Some test extensions that can be added to slicer4

DICOMSearch

A utility to put the DICOM standard into a searchable database with web app

facenav

SlicerAnimator

High level interface for Sequences and Screen Capture

nrrdify

utility scripts for converting dicom to nrrd (DWI)

Regimatic

Steered registration module for 3D Slicer

SlicerTissue

A collection of finite element code for simulation of soft tissue mechanics

slicer2-nohistory

An old version of 3D Slicer (no longer actively supported) - here for reference

VTKCustomShaders

A repository for testing custom VTK GLSL code

Slicer3-shallow

git clone of the http://svn.slicer.org/Slicer3 repository

SlicerCL

Extensions for Slicer that use OpenCL

CompareVolumes

Slicer module providing high level layout and visualization options

SlicerChronicle

A Slicer module that communicates with Chronicle

SlicerRC

Startup file for slicer4's python interface

CustomSlicerGenerator

Tool to help deploy custom applications

SlicerOnDemand

A Slicer Extension to launch Slicer enabled virtual machine instances

WandEffect

Example slicer4 Editor Extension to implement a simple magic wand label tool

wikid

web app mobile translation dictionary

slicer2

replica of cvs archive with history

slipype

Experimental integration of Slicer and NiPype

FiberQuantification

Slicer extension for operations on FiberBundles (DTI tractography)

Slicer-2017-html-slides

Slides from a Harvard/MIT training course on clinical imaging informatics made with html and reveal.js

nnmouse

Sample scripts for training nnU-Net on mouse fetus data

content

A repository to host some public content pages

dicomzoo

DICOM data for testing and tutorials

python

My experimental python copy

sem-html5

Experiments in generating HTML5 (specifically jqmobile) interfaces to the slicer execution model

judger

gcp-dicomweb-proxy

Simple proxy for dicomweb

node-dcmjs

a node package based on emscriptened dcmck (dcmjs.org)

CommonGL

Experiments in GLSL shading for Slicer and other environments

matplotlib

place for patches of http://matplotlib.sourceforge.net/index.html to work with http://slicer.org

qiicr-chart

experiments with charting of qiicr datasets

SlicerGetFEM

Interface between 3D Slicer and the GetFEM multiphysics system

SlicerEditor

Experiments with embedding a text editor in Slicer