nathanhaigh/embl-abr-snakemake-nextflow-workshop

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Created about 5 years ago
Updated almost 5 years ago

nathanhaigh/embl-abr-snakemake-nextflow-workshop

nathanhaigh

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Hands-on workshop for Snakemake and Nextflow

parallel-rsync

Parallelised rsync - using GNU parallel

amos

A clone of the official AMOS git repo on sourceforge: https://sourceforge.net/projects/amos/

ngs-handout

This project is in the process of being ported over to another repository.

2019_EMBL-ABR_Snakemake_webinar

Scripts and Snakemake pipeline used in the EMBL-ABR webinar

snakemake-tutorial

nathan_sysadmin_scripts

A collection of various sysadmin-related scripts which others might find useful.

safpis

safpis is a Python library to access the South Australia Fuel Pricing Information Scheme (SAFPIS) REST API

nectar-workshop-template

Files used for instantiating multiple VMs on the Australian NeCTAR Reseach Cloud for the purpose of running hands-on training workshops. It is also possible to generate NX Session files making the NX client setup fast and painless.

snakemake_template

A small template to ease setting up new Snakemake workflows capable of submitting jobs to a Slurm cluster such as phoenix.

docker-seqtools

Dockerfile for SeqTools (Blixem, Dotter, Belvu) from the Sanger

ronin_snakemake_demo

Demonstration Snakemake workflow for Ronin/AWS Slurm-based auto-scaling cluster